Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0838 |
Symbol | secD |
ID | 5746392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 934220 |
End bp | 936142 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641295918 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001561869 |
Protein GI | 160896287 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGAT ATCCGGTCTG GAAGTACGCG ATCATCGTGA TCGCGCTGCT GGTGGGGGTG CTCTACACCC TGCCCAATTT TTTCGGTGAG GCGCCTGCGG TGCAGGTCTC CTCGGCCAAG GCCACCGTCA AGGTGGACAA CGCGGTGCTG CACAGGGTCG AGGAGGCCTT GAAGGCTGCC GATGTCAAGC CCGATGTGCT GACCATCGAG GGCACCTCGG TGCGGGCGCG CTTCAACACG CCCGACGAGC AGCTCAAGGC CAAGGACGTG ATCCAGAAGG CCCTGATCCC CGATGCCAAC GACCCGGCCT ACATCGTGGC GCTGAACCTG GTGTCGCGCT CGCCGCAATG GCTCACGGCC GTCGGCGCCA AGCCCATGTA CCTGGGCCTG GACCTTCGCG GTGGCGTGCA CTTCATGCTG CAGGTGGACA TGGCTGCGGC CCTGACCAAG AAGGCCGACT CCTTTGCCGG CGACCTGCGC ACCTCGCTGC GCGACAAGAA CATCCGCCAC GGCGGCGTCT CGCGCAACGG CAACACCGTC GAGATCCGCG TGCGCGACGA GGCCATGCTC ACGGCCGCCC GCAATCTGGT CACCGACCAG TTCCCCGATC TGGCGGCCAC CTCCGAGCCT GATGGCGCCG GCTTCAAGCT GCTGGCCTCC ATCAAGCCCG AAGCCCTGCG CAAGGTGCAG GAGCAGGCGC TCAAGCAGAA CATCGTCACC CTGCACAACC GTATCAACGA GCTGGGCGTG GCCGAGCCCG TGATCCAGCA GCAGGGTCTG GACCGCATCA TCGTCCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG GGCCGCACGG CCACGCTGGA AGTGCGCCTG GTCGACGAAT CCTCCGAGGC GCGCGGCGCC GAGCTGGGCT CGGGCCCCGT GCCATTCGGC TCCGAGCGCT ACCTGGACCG CAACGCCCAG GCCGTGATCG TGCAAAAGCA GGTCGTGCTG ACCGGCGAGA ACCTTACCGA CGCACAGCCC GGCTTCGACA GCCAGACCCA GGAACCCACG GTCAACCTGG TGCTCGATGC CAAGGGCGCG CGCATCTTCA AGGACATCAC GCGTGAGAAC GTGGGCAAGC GCATGGCCAT CATCCTGTTC GAAAAGGGCA AGGGCGAGGT CGTGACGGCT CCCGTGATCC GTACCGAGAT CGGTGGCGGA CGCGTGCAGA TCTCGGGCCG CATGACCACG GCAGAAGCCA ACGACACGGC CCTGCTGCTG CGTGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATACACCAT CGGCCCCAGC CTGGGCGCCG ACAACATCAA CCGCGGCATC CACTCCGTGG TCTGGGGCCT GGTGGCCATC GCGGCCTTCA TGTGCGTGTA CTACATGCTG TTCGGCGTGA TCTCCACGGT GGCCCTGTCG GTCAACGTGC TGCTGCTGCT GGCCATCCTG TCCATGCTGC AGGCCACGCT GACCCTGCCC GGCATCGCCG CCATGGCGCT GGCGCTGGGC GTGGCCATCG ACTCCAACGT GCTGATCAAC GAGCGCATCC GCGAGGAACT GCGCGGCGGC GTCTCGCCGC AGGCCGCCAT CCATGCGGGC TACGAGAACG CATGGCACAC CATCCTGGAC TCGAACGTGA CCACGCTGAT CGCGGGCCTG GCGCTGCTGG CCTTCGGCTC CGGCCCGGTG CGCGGCTTCG CCGTGGTGCA CTGCATCGGC ATCCTGACCA GCATGTTCTC GGCCGTGTTC TTCTCGCGCG GCCTGGTCAA CCTCTGGTAC GGCCGCCGCA AGAAGCTCAA GAGCATCTCC ATCGGCCAGG TCTGGAAGCC GGAAGACACC AGCCAGTTGC GCTCGGTGAC GGCCAAGGGT TCCAGCGTCG CCGATTCCGG CGCCAACAAC TGA
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Protein sequence | MNRYPVWKYA IIVIALLVGV LYTLPNFFGE APAVQVSSAK ATVKVDNAVL HRVEEALKAA DVKPDVLTIE GTSVRARFNT PDEQLKAKDV IQKALIPDAN DPAYIVALNL VSRSPQWLTA VGAKPMYLGL DLRGGVHFML QVDMAAALTK KADSFAGDLR TSLRDKNIRH GGVSRNGNTV EIRVRDEAML TAARNLVTDQ FPDLAATSEP DGAGFKLLAS IKPEALRKVQ EQALKQNIVT LHNRINELGV AEPVIQQQGL DRIIVQLPGV QDTAKAKDIL GRTATLEVRL VDESSEARGA ELGSGPVPFG SERYLDRNAQ AVIVQKQVVL TGENLTDAQP GFDSQTQEPT VNLVLDAKGA RIFKDITREN VGKRMAIILF EKGKGEVVTA PVIRTEIGGG RVQISGRMTT AEANDTALLL RAGSLAAPME IIEEYTIGPS LGADNINRGI HSVVWGLVAI AAFMCVYYML FGVISTVALS VNVLLLLAIL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRGG VSPQAAIHAG YENAWHTILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY GRRKKLKSIS IGQVWKPEDT SQLRSVTAKG SSVADSGANN
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