| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0520 |
|---|
| Symbol | |
|---|
| ID | 5746063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 555532 |
|---|
| End bp | 559056 |
|---|
| Gene Length | 3525 bp |
|---|
| Protein Length | 1174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641295589 |
|---|
| Product | exodeoxyribonuclease V, gamma subunit |
|---|
| Protein accession | YP_001561551 |
|---|
| Protein GI | 160895969 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1330] Exonuclease V gamma subunit |
|---|
| TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.318804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0360548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCATCGC ATTGGCAGCC GGGCTTGATC GCCCTGCACG GGAATCAGAC GGAGGTGCTG
GCCGACACGG TGCTGGCATG GCTGGCTGCG CACCCGCTGG ATGTGCTGGA GCCCGAGGTG
GTGCTGGTGC AGAGCAACGG CATGGCCGAG TGGTTCAAGA TGCGCATGGC CGAGCAGCTG
GGCGTGTGCG CCGCCGCGCG CGTGGAACTG CCCGCGCGCT TTGTGTGGCG CAGCTACCGC
CAGGTGCTGG GCCGCCAGGC CGTGCCGCGC GAATCGCCCC TGGACAAGAC GCCCATGACC
TGGCGGCTCA TGCGCCTGCT GCCGCAGTGC CTTCATGACC CCGCCTTCGC CCCCATTGCA
GGCTTTCTGC GCCCCGGCGA GCCCGAGCGG CTGCTGCAAT TGGCCCAGCG CCTGGCCGAC
CTTTTCGACC AATACCAGAT CTACCGCGCC GACTGGCTGG ACGCCTGGGA GGCCGGGCAT
GACGTGCTGC CCATGCCCTT GCGCCCTGGT GTGGCGGACG CCACGGTGCC CGAAGGCCAG
CAGTGGCAGC CGCGCCTGTG GCGCGCCGTG CTGGCCGAGC TGGACGAGGA CCAGCGCGGC
GCCACGCGCG CGCGCCTGCA GGGCCGGGTG CTGGCCGCGC TGCAGTCCGG CGAGGCGCCG
GCCGCGCCGC TGGCACGCCG CGTGGTGGTG TTCGGCATCA GCCAGCTGCC GCTGAGCCTG
CTGGAATTCC TGGCCGCCAT GGCCCGCCAC AGCCAGGTGC TGCTGGCCGT GCCCAATCCC
TGCCGCTTCC ATTGGGCTGA CGCCATCGAC GGGCGCGAGC TGCTGCGCAT GGCGCGGCGC
CGCCAGCCGC TGCGCGGCGG GCGTGATCTG GCGCAGCTGC CGCTGGAGGC CATGCATGCC
CACGCCCATC CGCTGCTGGC CGCCTGGGGC CGGCAAAGCC GCGACTATGT GCGCCAGCTC
GACGCCTTCG ACACCACGGG TGCCGCCGCG CAGCTGCAGA TGCCGCGCGT GGACCTGTTC
GACGAAACCG ATGCCGAGGA CCTGCGCACC GCGCCGCTGC TGGCCCAGGT ACAGCAGCGC
ATCCGCGACC TGGTGCCGCT GGCCGAGCAC CCGCCGCTGG AGGTGGCGCG GGCCGATCGT
TCCATCGTCT TTCACAGCGC CCACAGCGTG GTGCGCGAAC TGGAGGTGCT GCACGACCAG
CTGCTGCAGA TGCTGGCCCG GCCACCGGAT CCAGCCCAGC CAGGGCAAGC GCCGCTGGCC
CCGCGTGACG TGGTGGTCAT GCTTCCGTCC ATAGAGACGG CTGCGCCCTC GATACGTGCG
GTCTTCGGCC AGTACGGACG CCACGACCCG CGCCACATTC CCTTCGACAT CGCCGACCTG
GGTGCGCGCG CCAGCAGCCC GCTGGCCGTG GCCCTGCAAT GGCTGCTGCG CCTGCCCCAG
CAGCGCTGCC GGCTCAGCGA GCTGTGCGAC CTGCTGGACG TGCCCGCGAT TGCCGCGCGC
ATGGGGCTGG CGGCCGACGA CCTGCCCCAG CTCACGCGCT GGATGGCCGG GGCCGGCATC
CGCTGGGGAC TCAATGCGCC GCAGCGCGGC GCCCTGGGCC TGCAGGCCTG TGGCGAGCAC
AACAGCGCCT GGTTCGGCCT GCAGCGCATG CTGCTGGGCT ATGCCGGCGG CGTGGCGCAG
GACGGCCAGG CCTTTGGCGG CATCGAGCCC TATGACGAAG TGGGCGGCCT GTCGGCCGAG
CTGGCCGGCG TGCTGGCCGC GCTGCTGGAG CGCATGCTGG CCTGGTGGCG CGAGGCCGGG
CGGCCCGCCA CGCCCGAGGC CTGGGCGCAG CGCTTTCGCG CACTGCTGCA GGACTTCTTC
AAGGCGCAGG ACGATGAGGA CGAGGCCATG CTGGCCGCGC TGGACGCCGC CCTCACGGAC
TGGCAGCGCG CCTGCGAGCA GGCCGGCTAC GCGGACGCCG TGGAACTGGG CGTGGCCCAG
GAGGCCTGGA TGCAGGCGCT GGAGCAGCCC TCGCTGTCGC AGCGCTTTCG CGCCGGTGGC
GTGACCTTTT GCACGCTGAT GCCCATGCGG GCCATTCCCT TCGAGGTGGT CTGCCTGCTG
GGCATGAACG ATGGCGACTA TCCGCGCCGC GCCACGCGCA GCGACTTCGA CCTGATGGCG
CTGCCCGGCC AGCAGCGCCC CGGCGACCGC GCGCGCCGCG ACGATGACCG CCAGCTCATG
CTCGAAGCCC TGCTGTCCGC ACGCCGCGCG CTCTACATCA GCTGGACCGG CCACCATGTG
CGCGACAACA GCGAGCAGCC GCCCTCGGTC CTGGTCTCGC AGCTGCGCGA CTACCTGGAG
ACGGGCTGGC GCGGCGAAGG CGGCCAGCCG CTGCTGGCGC AGCGCACGCA GCAGCACCCG
CTGCAGCCCT TCAGCCGCCG CTATTTCGAA GAAGGCTCGC CCTGGACCAC CTATGCGCGC
GAATGGCGGG CCGCGCATGC GCAGTCTGAC GGCACGGACG TGTTGCCTGC GCTGCCCGCG
CAGCCACGCC CGCCCTTTGT CCCCGACGCC TCGGCGCCGC TGACGCTGGC CCGGCTCACC
GATTTCCTGC GCCACCCGGC GCGCGCCTAC CTGCGCCAGC GCCTGCAGGT GCGCTTCGAG
CAGGAGGACA ACCCCGTGGT GGACGAGGAA CTGTTCCAGC TCGACGGCCT GACCGAATAC
CTGCTGGTGC AGCAGTTGCA GCAGCAGGTG GCGGCCGGCC TGGACGAGCC CGGGCAGGCG
CCCCAGGCCA TGGAAGACAG CGTGCGCGCC GCCGTCGCGC GCCTCACGCG CTCGGGGCGG
CTGCCGTTGG CGGGGCTGGG CGAGCGCGGC GCGCGGGCGC TGCAGTCCTC GGTCACGCCT
TCGCTGCGGG CCTGGCGCCA GCAACTGGAT CGGTATGCCC ATCCCGCGCC GCGCAGACGG
CTGCTGATCG AGGACGATGG CCTGGTGTTC GACGACTGGA TCGACGGGTT GCGCCAGTCC
TGCGAAACCG AAGAGTCCCC CGATGCGGAC GACGCACAGT GCTGGCTGCT GCTGGACCCG
CGCAACCTGC TCAATGCCAA GGGCAGGCCC CATGCCGACA AGCTCATGCC GGTCTACCTG
CGCAGCCTGG CGCTGGCCGC CAGCGGCTCG CAGGCCGAGT TGCGCGTGGT GGCGCGCGAC
GGCCTGGTGC AGGTGCTGCC CATGGACCCT TCCGAAGCGC TGACACGGCT GCGTGAATTG
ATGGCCCTGT GGCGCGAAGG CCAGAACGGC CCGCTGCCCC TGCCGCTGCG CAGCGGCCTG
GCCATGGCCG AAGGCTTTCC CGCTGCGGCC CAGCAGGCCT ATGAGGGCGG TCATCTGGTC
GGCGGCGAAG GCGAGGACCC GTCCTGGGCC CGCTGCTACC CTGACTTCGA ACGCCTGAGC
GCCGATGGCC GTTTCGAGGC CCTGGCCCAT GCCGCCCACG CGCCGCTGCT CGACTGGGTG
GCCGCGCAGG TGCAGGTCCT GCCGTACCAG GGGGATGCGC AATGA
|
|---|
| Protein sequence | MASHWQPGLI ALHGNQTEVL ADTVLAWLAA HPLDVLEPEV VLVQSNGMAE WFKMRMAEQL
GVCAAARVEL PARFVWRSYR QVLGRQAVPR ESPLDKTPMT WRLMRLLPQC LHDPAFAPIA
GFLRPGEPER LLQLAQRLAD LFDQYQIYRA DWLDAWEAGH DVLPMPLRPG VADATVPEGQ
QWQPRLWRAV LAELDEDQRG ATRARLQGRV LAALQSGEAP AAPLARRVVV FGISQLPLSL
LEFLAAMARH SQVLLAVPNP CRFHWADAID GRELLRMARR RQPLRGGRDL AQLPLEAMHA
HAHPLLAAWG RQSRDYVRQL DAFDTTGAAA QLQMPRVDLF DETDAEDLRT APLLAQVQQR
IRDLVPLAEH PPLEVARADR SIVFHSAHSV VRELEVLHDQ LLQMLARPPD PAQPGQAPLA
PRDVVVMLPS IETAAPSIRA VFGQYGRHDP RHIPFDIADL GARASSPLAV ALQWLLRLPQ
QRCRLSELCD LLDVPAIAAR MGLAADDLPQ LTRWMAGAGI RWGLNAPQRG ALGLQACGEH
NSAWFGLQRM LLGYAGGVAQ DGQAFGGIEP YDEVGGLSAE LAGVLAALLE RMLAWWREAG
RPATPEAWAQ RFRALLQDFF KAQDDEDEAM LAALDAALTD WQRACEQAGY ADAVELGVAQ
EAWMQALEQP SLSQRFRAGG VTFCTLMPMR AIPFEVVCLL GMNDGDYPRR ATRSDFDLMA
LPGQQRPGDR ARRDDDRQLM LEALLSARRA LYISWTGHHV RDNSEQPPSV LVSQLRDYLE
TGWRGEGGQP LLAQRTQQHP LQPFSRRYFE EGSPWTTYAR EWRAAHAQSD GTDVLPALPA
QPRPPFVPDA SAPLTLARLT DFLRHPARAY LRQRLQVRFE QEDNPVVDEE LFQLDGLTEY
LLVQQLQQQV AAGLDEPGQA PQAMEDSVRA AVARLTRSGR LPLAGLGERG ARALQSSVTP
SLRAWRQQLD RYAHPAPRRR LLIEDDGLVF DDWIDGLRQS CETEESPDAD DAQCWLLLDP
RNLLNAKGRP HADKLMPVYL RSLALAASGS QAELRVVARD GLVQVLPMDP SEALTRLREL
MALWREGQNG PLPLPLRSGL AMAEGFPAAA QQAYEGGHLV GGEGEDPSWA RCYPDFERLS
ADGRFEALAH AAHAPLLDWV AAQVQVLPYQ GDAQ
|
|---|
| |