| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0435 |
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| Symbol | |
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| ID | 5745972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 465437 |
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| End bp | 467890 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641295498 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001561466 |
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| Protein GI | 160895884 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TCGCCGAATA CCGCCAGCGC CCGGCCTTGC TTGCCGACTG GCTGCCCTGG
GCCGGGCTGG TCGCACCGGG CGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCC
CGGTTTCGCG GGCCTGACCT CGACAGCGCG ACGCAAGGCG AGCTGATCGC CACGTCGGCG
CGGTTGAACA ACGCGCTGCG CCGCATGGGA TCGGGCTGGG CGCTGTTCAT CGAAGCCGAG
CGCCGGCCTG CGGCCGACTA TCCGCACTCG GAGTTTCCCG AGCCGCTTTC GTGGGTGGTG
GAGGAAGAAC GCCGGGCCGC CTTCGAGGAA TCGGGCCATC ACTTCGAGAG CGGCTATCAC
CTGACGTTGC TTTACCTGCC GCCGGAAGAA TCCCGCGCCC GTGCAGCCAA GATGCTCTAC
GAGAACACAC CGACGAATGG CGTGGACTGG CGCGAGCGGC TGCAAGCCTT CGTCGCGGAA
ACGGATCGCG TCTTTGACCT GCTCGACGGC GTGATGCCGG AAATCGTCTG GCTGGATGAC
AGCCAGACGC TGACCTACCT GCACACGACC ATCTCGACGC GGCGCTACCG CGTCGGTGTG
CCCGAAGTGC CGTTCCACAT CGACGCCCTG CTGACCGACT CGCCGCTGGT CGGTGGCCTG
GCGCCCATGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGCGGTTT TCCGACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCTTGGGCT TTGCATATCG TTGGAGTACG
CGCTTTCTCT GTCTCGACAA ATCCGAGGCG GAAAAGGAAC TCACCCGCCT GCGCCGCCAG
TGGTTTGCAA AAAGGAAGAA CGTCATCGCG CTGCTGCGCG AAACGATCTT CCAGCAGGAA
AGCCCGTTGG TCGATACTGA CGCCAGCAAC AAGGCGACCG ACGCCGATGC CGCCTTACAG
GAGCTGGGCA GCGATCAGGT CGCCTTCGGC TATCTCACCG CCACGGTGAC GGTGCTCGAT
GCCGACCCGG CCGTAGCCGA CGAGAAGCTG CGCATGGTGG AGCGGGTCAT CCAGGGGCGC
GGCTTCGTCA CCATCCCGGA AACGCTCAAC GCCGTGGATG CGTGGCTGTC ATCCATTCCG
GGCAACGCTT ACGCCAACGT GCGCCAGCCC ATCGTCTCGA CGCTGAACCT AGCACACATG
ATGCCGGTGT CCGCAGTATG GGCGGGGCCG GAAAAGAACG ACCACCTCGA CGGCCCGCCG
CTGATCGTCA CGCGCACCGA TGGCGCGACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTCGC AGGCCCGACC GGCATGGGCA AGTCGGTCTT GCTCGCCACG
CTGGCGATGC AGTTCCGTCG CTATCGCGGT TCGCGCATCT TCGCCTTCGA CATGGGCCGC
TCGATGCGGG CCACGATCCT GGGCTTGGGC GGCGAACACT ACGACCTGGG CACGGATGGC
GAAATCGCCT TCCAGCCCTT GGCACGCATC GACCGCGAGG GCTACCGCAC CTGGGCCGCA
GAATGGGTCG AAGGCCGCTT GCTGCACGAA GGCGTGGCGG TCGGCCCCGA CGAGAAGGCG
GCTATCTGGT CGGCGCTTGG AAGCCTCGCC GGTGCGCCGG TGGAGCAGCG CACGATGACC
GGCCTGTCGG TGCTGCTGCA ATCGAACGCG CTGCGCCAGG CGCTCGCGCC CTACGTGCTC
GGTGGTGCGC ACGGCAAGCT GCTGGACGCT GACCACGACC GGCTCGGCAT GGCCGACGTG
CAGTGCTTCG AGATGGAGGA GCTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAT
TACCTCTTTG CGCGCTTCGA TGAACGCTTC GACGGATCGC CCACGCTGCT GATCCTCGAT
GAAGCGTGGT TGTTCCTCGA TGACCCGGTG TTTGCCGCGC GTATCCGCCA GTGGCTCAAG
ACGCTACGCA AGAAAAACGT GTCGGTGATC TTCGCCACGC AGTCGCTCGC GGACATCAAG
GATTCGAGCA TCGCCCCCGC GATTATCGAA AGCTGCGCCA GCCGCATCTT CCTGCCGAAC
CCGCAGGCGA CTGAGCCGCA GATTCGCACG ATCTACGAAG GCTTCGGCCT CAACAGCCGG
CAGATCGAGA TCGTCGCCAC CGCGCAGCCC AAGCGCGACT ACTACTACCA ATCCCGCCTC
GGCAACCGCC TGTTCGACCT CGACCTGGGG CCGGCCGCGC TGGCGTTTGC GGGCGCTTCC
ACGCCGCAAG ACCAGCGCGA CATAGACCGC GTGCTGCTGG ACGCCGGCGT ACCCGGCTTC
GCGGGCGCCT GGCTGCGCCA TCGCGGCCTC GATTGGGCGG CCGACCTGCT GCCCTCGTTC
CCCGGCCTTG CGCCGGGTTC CCTCGCTGAT CAACCCCTGG AGAACCTGTC ATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRMG SGWALFIEAE RRPAADYPHS EFPEPLSWVV EEERRAAFEE SGHHFESGYH
LTLLYLPPEE SRARAAKMLY ENTPTNGVDW RERLQAFVAE TDRVFDLLDG VMPEIVWLDD
SQTLTYLHTT ISTRRYRVGV PEVPFHIDAL LTDSPLVGGL APMLGDQHLR VVSVRGFPTS
TWPGILDDLN RLGFAYRWST RFLCLDKSEA EKELTRLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDASN KATDADAALQ ELGSDQVAFG YLTATVTVLD ADPAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPVSAVWAGP EKNDHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYRG SRIFAFDMGR
SMRATILGLG GEHYDLGTDG EIAFQPLARI DREGYRTWAA EWVEGRLLHE GVAVGPDEKA
AIWSALGSLA GAPVEQRTMT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DHDRLGMADV
QCFEMEELMH SKAAVMAVLH YLFARFDERF DGSPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDIDR VLLDAGVPGF
AGAWLRHRGL DWAADLLPSF PGLAPGSLAD QPLENLS
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