| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0004 |
|---|
| Symbol | |
|---|
| ID | 5745540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5770 |
|---|
| End bp | 6699 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641295067 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001561036 |
|---|
| Protein GI | 160895454 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.357807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTGA CCCTTCGCCA GCTCAAGTAC TTCACGGCGG TGGCCGAAGT GGGGCGCATC
TCACATGCGG CACTGCAACT CAACATCTCG CAATCGGCGG TGACCACGGC AGTCCGGGAG
CTGGAGGAAA TGCTGGGGCA GCAGCTGTTT GAGCGACAGC CTCATGGCGT GGAGCTGACC
CGGGCCGGAC GGCGGTTTCT GAGCCATGCC TATGCCGTGC TCTCGGCTGC AGACGAGGCG
ATCCGCATGC CGCATGAGGG AGTGAATGTC GAGGGGACGC TGACCATTGC CGCCACCTAC
ACGGTGCTCG GCTACTTCTT GCCCCATCAC CTTCAGCGTT TCGAGCAATT GCATCCGCAG
ATCAAGGTCA AGGTGCACGA GGTAGTGCGT GAAGCCATTG AGGAGGGGCT GATCACGCAG
CAATACGACA TGGGAGTACT GCTCACCTCC AATGTGGTGC TGCGCGAGCT GTCGCTCGAG
ACATTCTTTG GCTCGCAACG CCGACTGTGG GTGCCGGCCA AGCATGCGCT GCTCGAAAAG
GCGGAAGTCA CGCTGGCCGA TGTGGCTGCC GAGCCCTACA TCCTGCTCAC CGTGGACGAG
GCTGCGGGCA CTGCAATGAA ATATTGGAGC AAGACGCCGT ACCAACCTCA GATCAGGCTG
CGCACGAGCT CTGTAGAAGC AGTGCGCAGC ACCGTGGCGA ATGGCCTTGG CGTGACCGTT
CTCTCGGATA TGGTTTATCG ACCTTGGTCG CTGGAGGGAA AGCGCATTGA AACCATCAGT
CTGCGCGACG CCGTGCCAAC GATGAACATC GGGCTTGGGT GGAAGCAAGG CATCGAATTT
TCCCCAGCGA TGACGGCGTT TCGCGATTAC TTTCGGCAGT TGTTTCTCGA GCCGGTCGTG
CATCAAGGCA GAAGAAGGCC CGGCGGTTGA
|
|---|
| Protein sequence | MSLTLRQLKY FTAVAEVGRI SHAALQLNIS QSAVTTAVRE LEEMLGQQLF ERQPHGVELT
RAGRRFLSHA YAVLSAADEA IRMPHEGVNV EGTLTIAATY TVLGYFLPHH LQRFEQLHPQ
IKVKVHEVVR EAIEEGLITQ QYDMGVLLTS NVVLRELSLE TFFGSQRRLW VPAKHALLEK
AEVTLADVAA EPYILLTVDE AAGTAMKYWS KTPYQPQIRL RTSSVEAVRS TVANGLGVTV
LSDMVYRPWS LEGKRIETIS LRDAVPTMNI GLGWKQGIEF SPAMTAFRDY FRQLFLEPVV
HQGRRRPGG
|
|---|
| |