| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1351 |
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| Symbol | gspE |
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| ID | 3229371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | + |
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| Start bp | 1220622 |
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| End bp | 1222958 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637120913 |
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| Product | type II secretion system protein GspE |
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| Protein accession | YP_182062 |
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| Protein GI | 57233906 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCAGA ACAAAGTTAA AGATACAGAA CTCCGCAAAC TGGTTAGTAA ACGGGTGGCA
GATTATCTGT CCAGCCACAG CTACCAGGTG GAAACTGATG TCAAAATAAC CGGTCAGTCC
GGTGTGGAGC ACGTCTTTGA TATAGTAGCC CGCCGGAATG ACGGTTTTAC TACCAGAACA
ATGGCGGTTT GCATAACTCT GGGTTCAAAC CAGGAAGAAG AAAGCAGCGC TATTTTTAAC
TTTGCCAATA AGGCTTTTGA CACCGGTATA AATGAACGTA TTCTTATTGC CATACCCAAA
CTCACCCCCG AAACCCGCAA TCTGGCTGAA AAACAGCGAA TAAAAGTCTT TGATGAAGAC
CGTCTGGAAG ACCTGCTGGT CAGCAATACC AAACACCCCA GCCGTCTGGA GAGTATAGGC
AACATCTCCA CCCGCGAAGA CCTTATTAAC GCTCTGACCG GCCTGGGCTA TACCATAAGG
GAAAATGCCC GTATCAAAGG GCGTTCCGGC ATTTCACACG TGTTTGACAT AGTGGCTAAT
GATATCAATA CTGACAACTA TACCCTGGGG ATAGACATTA TCAAAAAACA GCCCTCCCTT
GAGCTTCAGG ATGTGGCTCT GTTTGACGCT AAAGCCTTTG ATTGCGGCAT AGTTGACAAG
CTGATAGCTA CCGCCTCCCA GATAACCGCT GATGCCCAGC AGTTTGCTGA TGCCCAGAAG
GTCAAGCTTA TAAAATTTAA ACCCGTTACT ATAGCTACCG AAGAGGGGGC TGCGGTAAAT
ACAGCCCAAG AAGTTATAAA GACCTCAGCC AAAACCGACA CTAAAAACGG CAAAACTGCC
ATAACCGACC TGCGCCAGTC ACCCCGCCCC GAAGCGCTCA AGCTCATTCC CGAAGTGCTT
GCCCGGCGTT ACACTGCTAT ACCCCTGAAT GTAGTGGGTA ATACCCTTGA GATGGCCATG
GCAGACCCGT CTGACATACT GGCACTTGAA GCCTTTTCCG CCCATTCCAA ACGCCGCATC
AAGCCCATAC CGGCAGATGC CCGCGAAATA CGCGAAGCTA TAGACTTTAA CTACAAAGGT
TACGGGGATA TTGAAAAATA CCTTTCCCGC ATGTCAATAC CCAGCGAAGT CACCGATGAC
CGTCTGGCTA TTGATGCCGC TATTGACGCA CCTTTAGCCC AAGCCCTGAA CCTGATTATT
GAAGAAGCGG TAAAAGCCCG CTCGTCAGAC GTACATATTG AGCCCAACGA AGACCGTCTG
CGGGTGCGTT TCCGTATTGA CGGCACACTT CAGGATATGA TGTCTTTACC CATCACCGCC
CACCGGGCTA TTATTTCCAG AATAAAAATC CTGGGTGATA TGAATATTGC AGACCATTTC
CACGCACTTG ACGGCCAGTT TACGGTAAAT GCCGGCGGAC GGGAAATAGA TATCCGGGCG
GCAACCGCTC CTACCGTAAA CGGGGAAATG TCGGTGCTGC GGCTGCTGGA TAAAAGCCGG
GCTACCATAG AACTTTCCCA GCTGGGCTTT TTGCCGGACA GCCTGGAAAA ATACAACAAA
ATGCTCAAAG TGCCCTACGG CATGATACTT ATCAGCGGCC CTACCGGCGC CGGTAAGACC
ACTACCCTTT ATGCATCTAT AAACTCGCTG GATATCATGC GGCAAAATAT TATTACCATA
GAAGACCCGG CGGAATACCG CTTTAAAAAT ATAAACCAGA TACAGGTAAA TACCCAGGCC
GGCATTACCT TTGCCAGCGG CCTGCGTTCT ATCCTCCGCC TTGACCCTGA TGTAATCCTG
GTAGGTGAAA TACGTGATGC TGAAACAGCC AATATAGCCG TTCAGGCAGC CCTTACCGGC
CACCTGATGC TTTCATCTAT ACACGCCAAT GACACTACCG GCGTCCTTTA CCGCTTGATA
GACCTGGGAG TAGAACCCTT CCTGATTGCT TCAGCTGTGG TAGGGGTAGT AGCCCAGCGT
ATGGTCAGGC GGATTTGCCC GTACTGCCAG CATACCATTG AAGTACCGGT TATTGAGCAG
GTAGCTTACG AACGGGAAAT CGGGGAGAAA CGAACCAAAT TTGTATATAG CAGCGGCTGT
AAATCATGTG CCTTCACCGG CTATCTGGGC CGGGTGGGCC TGTTTGAGAT AATGACTATA
AGTGATGAAA TCAGGCGGCT GATGCTAAGC GGGGCTTCCC CGTCCGAAAT ACACGCCCAA
TCCATTAAAG ACGGCATGAT TACCATGATG AAAGATGGTA TGCTGAAGGT AAAAGACAAT
ATAACCACCC CCTCCGAAGT ACTACGCAGT GCCTATTCTC CGGAGGAGCA GTATTGA
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| Protein sequence | MLQNKVKDTE LRKLVSKRVA DYLSSHSYQV ETDVKITGQS GVEHVFDIVA RRNDGFTTRT
MAVCITLGSN QEEESSAIFN FANKAFDTGI NERILIAIPK LTPETRNLAE KQRIKVFDED
RLEDLLVSNT KHPSRLESIG NISTREDLIN ALTGLGYTIR ENARIKGRSG ISHVFDIVAN
DINTDNYTLG IDIIKKQPSL ELQDVALFDA KAFDCGIVDK LIATASQITA DAQQFADAQK
VKLIKFKPVT IATEEGAAVN TAQEVIKTSA KTDTKNGKTA ITDLRQSPRP EALKLIPEVL
ARRYTAIPLN VVGNTLEMAM ADPSDILALE AFSAHSKRRI KPIPADAREI REAIDFNYKG
YGDIEKYLSR MSIPSEVTDD RLAIDAAIDA PLAQALNLII EEAVKARSSD VHIEPNEDRL
RVRFRIDGTL QDMMSLPITA HRAIISRIKI LGDMNIADHF HALDGQFTVN AGGREIDIRA
ATAPTVNGEM SVLRLLDKSR ATIELSQLGF LPDSLEKYNK MLKVPYGMIL ISGPTGAGKT
TTLYASINSL DIMRQNIITI EDPAEYRFKN INQIQVNTQA GITFASGLRS ILRLDPDVIL
VGEIRDAETA NIAVQAALTG HLMLSSIHAN DTTGVLYRLI DLGVEPFLIA SAVVGVVAQR
MVRRICPYCQ HTIEVPVIEQ VAYEREIGEK RTKFVYSSGC KSCAFTGYLG RVGLFEIMTI
SDEIRRLMLS GASPSEIHAQ SIKDGMITMM KDGMLKVKDN ITTPSEVLRS AYSPEEQY
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