Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0604 |
Symbol | rpoC |
ID | 3230059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | + |
Start bp | 558413 |
End bp | 562300 |
Gene Length | 3888 bp |
Protein Length | 1295 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637120169 |
Product | DNA-directed RNA polymerase, beta' subunit |
Protein accession | YP_181346 |
Protein GI | 57234591 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACGAAG TTAATGATTT TGATGCAATA CGGATTTCAC TGGCTTCCCC TGACCAGATA AGAAGCTGGT CTTATGGTGA GGTTACCAAA CCTGAAACCA TAAACTATCG TACGTTAAAG CCGGAGCGGG ACGGTCTGTT CTGTGAGCGT ATCTTCGGCC CTATAAAGGA CTTTGAGTGT GCCTGCGGCA AATACAAACG TATCCGCTAC AAGGGCATTA TATGTGACAA GTGCGGCGTG GAAATTGCTC GTGCCAAGGT ACGGCGTGAA CGGATGGGGC ATATTGAACT GGCCTGTCCG GTAGGCCATA TCTGGTTTAC CCGCGGTATT CCCAGCCGGG TAGGCCTGCT GCTTAATTTG TCCACCCGCA GCCTTGAAAG GATAATTTAT TATTCCCATT TCATTATAAC CGGGGTAAAT GACGAAGCCC GTGAAAAGGC CATTAAAGAT TTGGAGGTTA TTTCCTCCCA GCGGGTAGCT GATAAGGGCA GCGAGGTAGA TACCAGGGTT GCCCAGATGG AAGCCGAAGA TGCCACTGTT GAAGCCATAA ATCAGGTTCG CCGTGATTTT TCAACTGAAC GTGAGCAGAT GGAAGAAGAT ATCCAGCTGC TTATAGACCA GCTGAAAGAC CTCCAAATAG GCAATTTGCT GACCGAAAAC CAGTATTACG AGCTGAAACA GCGTTTCAGC AATGTTTTTG AGGCCTCCAT GGGTGCCGAA GCTCTGCTTA AGCTGCTTTC TTATATAGAT ATGGATAAGG AGCGGAGCAA ACTTATTCAG GAAACCCGCT CCACTTCCGG CCAGCGCCGC AAAAAGGCTG GCAAACAGCT TCAGCTGGTA GAGGCTTTCC GCCGCTCCAG CAACAAGCCT GAGTGGATGA TTATGACGGT TCTGCCGGTA CTGCCGCCTG ACCTGCGTCC TATGGTTCAG CTTGACGGCG GCCGTTTTGC CACCAGTGAC TTAAATGACC TTTACCGCCG GGTTATCAAC CGGAACAACC GTCTCCAGCA CCTGATGGAA ATCGGGGCGC CGGAGATTAT TATCCGCAAC GAAAAGCGTA TGCTTCAGGA AGCGGTGGAT TCACTTATTG ATAACGGACG CCGCGGCAAG AGCGTGGCTG TAAATGGTGA CCACAAAGCC AAGTCCCTTT CTGACCTGCT TCGCGGCAAA CAGGGACGCT TCCGCCAGAA CCTGCTGGGT AAACGGGTTG ACTATTCAGG CCGTTCGGTT ATTGTGGTAG GCCCTTCACT CAAACTTTCA CAGTGCGGTC TGCCCCGCCG TATGGCACTT GAACTCTTTA AGCCCTTTGT CATGCACCGC TTGGTACGGG ACGGCTTAGC CCCCAATATC AAGAGCGCCC GCCGTCTGGT AGAGCGCGCC CGCCCGGAGG TTTACGATAT TCTGGAAGAG GTGGTCAAGG AGAGGCCGGT TATGCTTAAC CGCGCTCCCA CTCTGCACCG CCTTAGTATC CAGGCCTTTG AGCCGGTGCT TATTGACGGC AGTGCCCTCA GGCTTCACCC GCTGGTCTGT TCAGCCTTTA ACGCTGACTT TGACGGTGAC CAGATGGCTG TCCACGTGCC CCTTTCCAAA GCGGCCGTGA AGGAAGCCCG TGAAACCATG CTGTCCATTC ATAATATGAT GCTTCCCTCC AGCGGTGAGC CGGTGGTATC CCCCAGCCTT GATATGGTCT TCGGGTGTTA TTACCTGACT ACTACCCGGC CGGGTGCTAA GGGTGAAGGC AAGATATTCA GTGACTTTGA AGAAGCCAAG CACTATTACG AAATGGGTAT TATTGACCTC AGGGCTATTA TCAAAGTCCG TGACGGCAAG GGTAATATGC TGGAAACCAC TACCGGGCGG ATTATATTTA ATGATGTCCT GCCCAAGGAA GTAGAGTTCC AGAATATGGA TATACCCAAA TCCGCCATCA AAAAGATAAT CGGCCGCTGT TACAAGATTC TTTCCAGCCA GGATATGGCC GTCATGCTGG ACAAGATAAA ACAGCTTGGC TTCAAATACG CCACCAGCTC AGGCATTTCC ATTGCCATGA GTGATATTTC GGTGCCGCGT GAAAAGGCCA AGCTGGTAGC TGCCGCTGAT GAGCGGACTG CCATTTCCGA AGGTCAGTTT GCCCGCGGTC TTATCACCGA AGACGAACGC TACAACAGCA TCATTGAAAC CTGGATGGAA ACTACTGACC GCATTACAGA TGCTATTCAG GCCGGTTTTG ACAAACAGGG TTCCGTGTAC ATGATGGCTA ACTCCGGCGC TAAGGGTAAT ATTTCCCAGA TACGCCAGAT GGCCGGTTTA CGCGGCCTTA TGACTAACCC GTCCGGCCGT ATTATTGACT TCCCCATCAA GTCTTCCCTG CGTGAAGGCC TGACTACTCT GGAATACTTT ATATCTACTC ACGGTGCCCG CAAGGGTCTG GCTGACACCG CTTTACGTAC GTCCGGTTCA GGTTACCTGA CCCGCCGCCT TATAGACGTA ACCCAGGATG TTATTATCCT TCAGGAAGAC TGCGGCACTT CAAACGGCAC CTGGATAGTA GAACCCAAAG AAAAGGGTAT GCTGCCCCCG CTGGTTGACC GTGTACTCGG CCGCTGGGCA GCTCACAATG TGGTTCACCC CCAGACCGGC GAAATTATCG TGGGTAACAA TGAAGAGATT GACGAAGCTA AGGCTAAGGC TATCGGCGAA GCCGGTATCA CCGAAGTCTT TGTCCGCTCT CCGCTTACCT GCGAAGCTAC TCACGGCATG TGCCGCCGCT GTTACGGGCG TGACCTTGGC CGTGTCCGTC TGGTAGACAT GAATACCGCC GTAGGTATCA TTGCCGCCCA GAGTATCGGT GAGCCCGGTA CCCAGCTGAC ACTCCGTACC TTCCATACCG GCGGTGTGGT AGGCGTAGAT ATTACGACCG GTCTTCCCAG AGTTGAAGAA CTCTTTGAGG CCCGTCCGCC CAAGGTTCAG TCCATTATTT CTGAAATAGA CGGTGAGGCC GAGGTTATTG AAAATGAAAA CGGCCGCCAT ATCCGCATAT TCTCTGATGA AGTATATCAG GACGAATATG AGCTGCCTTC CGGCTGGAAG ACTCAGGTTC AAAGCGGACA GTGGGTGGAT TCCGGCATGG TGCTGGCTTC GCCTGAAATG GAAGGCAAGT CCAAGGCGGT AGTTCAGAGT GACCAGAATG TGGTTGCCAG AGTGGCCGGT GAAGTTTCAG TGGATGGCAG CCTTATCACC ATCAAATACA GCGAAAGCGA AGAACGTGAA TACGCTATAC CTGCCGCCAT GCAGATAAAG GTTAAAACCG GGGATAGTGT CCGTGCCGGT CAGCAGCTGA CTGACGGCTC TATAAACCCG CAGGATATTC TGTCCATTTT GGGCAGGGAC GCTGTCCAGA AGTATCTGGT TGAAGAAGTC CAGAAGGTTT ACTACTCTCA GGGCGTACAT ATCAACGATA AACACATAGA GGTTATTGCC CGCCAGATGC TTATCAAGGT ACGCATTGAC TCCTCAGGTG ATACTGACCT GGTTCCGGGT GAACTGGTAG ACAAGTTCCG CTACGAGGAT ATCAACGCTA AGGTTCTGGC CGAAGGCGGC GAACCGGCAA CCGCCCATAC CGTGCTTATG GGTATTACCC GTGCTTCACT CAGCACCGAA AGCTGGCTGG CGGCGGCCTC CTTCCAGGAG ACCACCCGTG TCCTTACTGA TGCCGCCATT TACGGCAAGG TGGATAAGCT GTCCGGCCTT AAGGAAAATG TTATCATAGG CAAGCTTATA CCTGCCCAGT GCAAATCCTG CAAGGAAGCT ACGGTTGAAA GAGCGGAACG GATAGCCGCT GCCGCTGCCG CACCTGCGGT CAGCACTCTG CCGGAAAATT GCCTTTAG
|
Protein sequence | MNEVNDFDAI RISLASPDQI RSWSYGEVTK PETINYRTLK PERDGLFCER IFGPIKDFEC ACGKYKRIRY KGIICDKCGV EIARAKVRRE RMGHIELACP VGHIWFTRGI PSRVGLLLNL STRSLERIIY YSHFIITGVN DEAREKAIKD LEVISSQRVA DKGSEVDTRV AQMEAEDATV EAINQVRRDF STEREQMEED IQLLIDQLKD LQIGNLLTEN QYYELKQRFS NVFEASMGAE ALLKLLSYID MDKERSKLIQ ETRSTSGQRR KKAGKQLQLV EAFRRSSNKP EWMIMTVLPV LPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLQHLME IGAPEIIIRN EKRMLQEAVD SLIDNGRRGK SVAVNGDHKA KSLSDLLRGK QGRFRQNLLG KRVDYSGRSV IVVGPSLKLS QCGLPRRMAL ELFKPFVMHR LVRDGLAPNI KSARRLVERA RPEVYDILEE VVKERPVMLN RAPTLHRLSI QAFEPVLIDG SALRLHPLVC SAFNADFDGD QMAVHVPLSK AAVKEARETM LSIHNMMLPS SGEPVVSPSL DMVFGCYYLT TTRPGAKGEG KIFSDFEEAK HYYEMGIIDL RAIIKVRDGK GNMLETTTGR IIFNDVLPKE VEFQNMDIPK SAIKKIIGRC YKILSSQDMA VMLDKIKQLG FKYATSSGIS IAMSDISVPR EKAKLVAAAD ERTAISEGQF ARGLITEDER YNSIIETWME TTDRITDAIQ AGFDKQGSVY MMANSGAKGN ISQIRQMAGL RGLMTNPSGR IIDFPIKSSL REGLTTLEYF ISTHGARKGL ADTALRTSGS GYLTRRLIDV TQDVIILQED CGTSNGTWIV EPKEKGMLPP LVDRVLGRWA AHNVVHPQTG EIIVGNNEEI DEAKAKAIGE AGITEVFVRS PLTCEATHGM CRRCYGRDLG RVRLVDMNTA VGIIAAQSIG EPGTQLTLRT FHTGGVVGVD ITTGLPRVEE LFEARPPKVQ SIISEIDGEA EVIENENGRH IRIFSDEVYQ DEYELPSGWK TQVQSGQWVD SGMVLASPEM EGKSKAVVQS DQNVVARVAG EVSVDGSLIT IKYSESEERE YAIPAAMQIK VKTGDSVRAG QQLTDGSINP QDILSILGRD AVQKYLVEEV QKVYYSQGVH INDKHIEVIA RQMLIKVRID SSGDTDLVPG ELVDKFRYED INAKVLAEGG EPATAHTVLM GITRASLSTE SWLAAASFQE TTRVLTDAAI YGKVDKLSGL KENVIIGKLI PAQCKSCKEA TVERAERIAA AAAAPAVSTL PENCL
|
| |