Gene DET0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET0004 
SymbolgyrB 
ID3229139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand
Start bp3881 
End bp5809 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content52% 
IMG OID637119574 
ProductDNA gyrase, B subunit 
Protein accessionYP_180759 
Protein GI57233676 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGATG AAAATAAAGC CAAACCGGGT GCAAATGCCG AAAACTATAA CGCCAGTGAT 
ATCCAGGTAC TGGAAGGTCT GGCCGCTGTC CGCAAAAGAC CGGGCATGTA TATCGGCTCT
ACTGACCAGC GCGGTTTGCA CCACCTGGTT TATGAAATTG TTTATAACAG CGTAGATGAA
GCTATGGCCG GGGTATGTGA CCGCATAAAG GTCATTATTT ATAAAGACGG CAGCGTCAGC
GTTGAAGACA ACGGCCGCGG TATCCCGATA GATATTCACC CTGTGACCAA GATTTCCGCC
CTGGAAACAG TTATGACCGT CCTGCATGCC GGTGCCAAAT TCGGCGGCAA GACCTATCAG
GTATCCGGCG GTCTGCACGG GGTGGGCGCT TCAGTAGTAA ACGCTCTGGC CGAATGGACT
ACGGTCAAGG TCAGGCGTAA CGGCAAAATC TACCAGCAAA GCTACCAGCG CGGCAAGCCC
AGCACCCCGC TGGAAGAAGT GGGGGTATCA GACGGTTCCG GCACCACCAC TATATTCAAG
GCGGACTCGC AGATATTTTC CACTACGGAA TATGATTTTG AAACCCTGAC TGACCGCCTG
CGGGAAATAG CCTACCTCAA CAAAGGGCTT GAGGTTTATA TTTATGACGA ACAATCTGAC
CAGGAGCGGA CGTATTATTT TGAGGGCGGC ATCACCGGCT TTGTCCGCCA TTTAAACCGC
AACCGCGAGG TACGCCACCG CCAGCCCATT TATATAACCA AAAAATCAGA CAGCACTATA
CTGGAAGTAG CTATCCAGTA CAATGACGGC TACTCGGATT CCACCCTGAC CTTTGCCAAC
TGTGTAAACA CCATTGACGG CGGCACTCAC CTTACCGGTT TCCGTTCCGC CCTGACCCGG
GCTTTCAATG ACTATGCCCA CAAGTCAAAA TTCCTTAAAG ACACAGACCC CAACCTGATG
GGTGATGACG TGCGCGAAGG CATAGTAGCC ATTGTCAGCG TCAAACTGCC CGAACCCCAG
TTTGAGGGAC AGACCAAAGG CAAGCTGGGA AATATTGAAA TAAAGAGTTT TGTGGAAAGT
GCCGTTACCG AACAGCTTTC CCTGTATCTG GAAGAACACC CGGATGATAC CAAACGTATT
TTGGAAAAAT GTATCACCGC CGCCAAGGCC CGTGAAGCCG CCCGCAAGGC CCGTGACCTG
ATTATCCGCA AGAGCGCTCT GGATACAGGC ACCCTGCCGG GCAAGCTGGC TGACTGTTCG
GAACGGGATG CTTCGCTGTG CGAACTCTTT CTGGTAGAGG GTGATTCGGC AGGCGGTTCA
GCCAAACAGG GGCGTAACCG CCGCTTTCAG GCCATACTCC CGCTGCGGGG TAAAATTTTA
AACGTAGAAA AGGCTTCACC GGACAAGATG CTGGCCCACG AGGAAATCAG GGCTATCATT
ACCGCTCTGG CAGCCGGCAT AGATAATGAC TTTGACCCCG CCAAACTGCG CTACAACCGT
CTGGTACTCA TGACAGATGC TGACGTGGAC GGCTCACATA TACGGACACT CCTTTTGACC
TTTTTCTTCC GCCATATGCC CCGGCTTATT ACCGAAAGCC ACTTGTTTAT TGCCCAGCCG
CCTCTTTATA AGATAAAAAT AGGCAGCAAC GAACACTGGG TATACAACGA TGCCGAAAAA
GAGACCCTGC TTTCCCAAAC CAAGAGCAAC AAAGTGGATA TCCAGCGCTA TAAAGGTCTG
GGTGAAATGA GTGCCGAGCA ACTCTGGAAG ACAACCATGG ACCCGGCCAG CCGCACATTA
CTTGAAGTAA AAGTGGAAGA TGCCGCCAAG GCAGACCAGA TTTTTAACCT GCTGATGGGC
GGTGAAGTGG CTCCCCGCAA GGCCTTTATC CAGTCCCATT CCAAAACAGT TAAGAATCTG
GATATCTAA
 
Protein sequence
MLDENKAKPG ANAENYNASD IQVLEGLAAV RKRPGMYIGS TDQRGLHHLV YEIVYNSVDE 
AMAGVCDRIK VIIYKDGSVS VEDNGRGIPI DIHPVTKISA LETVMTVLHA GAKFGGKTYQ
VSGGLHGVGA SVVNALAEWT TVKVRRNGKI YQQSYQRGKP STPLEEVGVS DGSGTTTIFK
ADSQIFSTTE YDFETLTDRL REIAYLNKGL EVYIYDEQSD QERTYYFEGG ITGFVRHLNR
NREVRHRQPI YITKKSDSTI LEVAIQYNDG YSDSTLTFAN CVNTIDGGTH LTGFRSALTR
AFNDYAHKSK FLKDTDPNLM GDDVREGIVA IVSVKLPEPQ FEGQTKGKLG NIEIKSFVES
AVTEQLSLYL EEHPDDTKRI LEKCITAAKA REAARKARDL IIRKSALDTG TLPGKLADCS
ERDASLCELF LVEGDSAGGS AKQGRNRRFQ AILPLRGKIL NVEKASPDKM LAHEEIRAII
TALAAGIDND FDPAKLRYNR LVLMTDADVD GSHIRTLLLT FFFRHMPRLI TESHLFIAQP
PLYKIKIGSN EHWVYNDAEK ETLLSQTKSN KVDIQRYKGL GEMSAEQLWK TTMDPASRTL
LEVKVEDAAK ADQIFNLLMG GEVAPRKAFI QSHSKTVKNL DI