Gene Cyan8802_4392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCyan8802_4392 
Symbol 
ID8393744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8802 
KingdomBacteria 
Replicon accessionNC_013161 
Strand
Start bp4537339 
End bp4538115 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content42% 
IMG OID644982301 
ProductRNA polymerase sigma factor SigF 
Protein accessionYP_003140012 
Protein GI257062124 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.135805 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000384566 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTACCC CCATCAAAGA AAATTTAAAA CTCGATACTC TTCGTTTATT TCTGGATTAT 
CAAAAAACGG GAAGCATCCA ACTGCGTAAC CAGATTTTGG AACTCAATTT TGGGTTAGTT
CGCAAAGAAG CATACCATTG GGTTAACCAT TGTTCTGAAA GCTATGAAGA TTTGTTACAA
GTTGGCTCAT TAGGACTCAT TCGAGCCATT GAGCGTTTTA ATAGCGAAAA AGGTCATGCG
TTTAGTTCCT TCGCGCTGCC CTACATTCGG GGAGAAATTC AACACTACCT GCGGGACAAA
GGGTATACCG TTCGTATTCC CCGACGCTGG TTAGAGATAG GACAACAAGT CAAAAGCATT
AAACAAGACT TTCGCGAACG GTTCAACCGT CAACCAACGG ATTCAGAAAT TGCTCAAATT
TTGGAAATTC CCCTGAAAGA GTGGCAAGAA ATTCAACTCG CTTTTCAAAA CCGTGAACCC
CTCAGTCTGG ATCTTAAAGT CGGTAATGAC AGTGATGGAC AAACCAGCTT AGCGGATTTA
GTTCCTGATC CCAACTATCG GAGTTTTCAA TTAAGTCAAG AAGATCAAAT TCGTTTACAA
CAAGGATTAG CACAATTAGA AGAACGCACA CGACGAATTT TAGAATTTGT GTTTCTTCAG
GATCTCACTC AACGGGAAAC GGCCGAACAA TTGGGGATTA GTGTCGTGAC TGTCTCTCGA
CGGGTGAAAA AAGGACTAGA AATCCTCAAA CAAACCATGA CGGCAGAGAT CTGGTAA
 
Protein sequence
MSTPIKENLK LDTLRLFLDY QKTGSIQLRN QILELNFGLV RKEAYHWVNH CSESYEDLLQ 
VGSLGLIRAI ERFNSEKGHA FSSFALPYIR GEIQHYLRDK GYTVRIPRRW LEIGQQVKSI
KQDFRERFNR QPTDSEIAQI LEIPLKEWQE IQLAFQNREP LSLDLKVGND SDGQTSLADL
VPDPNYRSFQ LSQEDQIRLQ QGLAQLEERT RRILEFVFLQ DLTQRETAEQ LGISVVTVSR
RVKKGLEILK QTMTAEIW