| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_3211 |
|---|
| Symbol | secF |
|---|
| ID | 8392546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 3284130 |
|---|
| End bp | 3285062 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644981157 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_003138884 |
|---|
| Protein GI | 257060996 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.828599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA ATGTTATTAA ATCACAACGC TTGTGGTGGT CGATTTCGGG ATTAATTATC
CTGATTGGAC TTATCGGAAT GGTCGTTTCC TATTCCACGT TTCAATCTCC CCTACGCCCT
GGATTAGACT TTATTGGGGG AACCCGACTC CAATTACAAT TAACCTGTGG AGTTCAGGGA
AACTGCGAGA AACCCATTAG TACAGGAGAA GTCCAAGAGA TTTTGAACCA ACAGGGCTTA
TCTAGTAGTA CCATTCAAGT GTTAGAAGGC AATATTCTGT CTATTCGCAG CAAAACCCTA
GATGTAGACC AACGGACTAA ACTACAACAG GCATTAACCG AGAAAATTGG CCAATTTGAC
CCCGAAACCG TTCAAATTGA TACGGTTGGG GCAACAGTGG GCAAAGAGTT ATTTACGTCA
GGGATTTTAG CCCTTTTGGT GTCTTTCTTT GGCATTATTG TCTATCTCAG TGTTCGCTTT
CAATTTGACT ATGCTTTCTT CGCTATTGTT GCCCTAGTCC ATGATGTTTT GGTCACGGCC
GGAGTATTTG CCATACTAGG ATTAGTCGCA GGGGTAGAGG TTGATAGTCT ATTCTTGGTG
TCCCTATTAA CGATTATTGG TTTCTCGGTT AATGATACGG TCGTTATTTA TGACCGTATT
CGGGAAAATT TAGAGAAAAC TCCTGAATTA ACTATTAATG ACATCGTGGA CAATGCCGTT
AATCAAACCC TGACCCGTTC GATTAACACC AGTTTAACGA CCGTTTTGCC ACTGATTGCT
ATTTTTCTGT TTGGGGGAGA AACCCTCAAA TACTTTGCCC TTGCCTTGAT TATTGGCTTT
ATCGCCGGGG CTTATTCGAG TATCTTTATT GCCAGTACCC TACTCGCTTT ATGGCGCAAT
CGTCAACAGT TATCAGTAAT CAGTAAACAG TAA
|
|---|
| Protein sequence | MKLNVIKSQR LWWSISGLII LIGLIGMVVS YSTFQSPLRP GLDFIGGTRL QLQLTCGVQG
NCEKPISTGE VQEILNQQGL SSSTIQVLEG NILSIRSKTL DVDQRTKLQQ ALTEKIGQFD
PETVQIDTVG ATVGKELFTS GILALLVSFF GIIVYLSVRF QFDYAFFAIV ALVHDVLVTA
GVFAILGLVA GVEVDSLFLV SLLTIIGFSV NDTVVIYDRI RENLEKTPEL TINDIVDNAV
NQTLTRSINT SLTTVLPLIA IFLFGGETLK YFALALIIGF IAGAYSSIFI ASTLLALWRN
RQQLSVISKQ
|
|---|
| |