| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_5128 |
|---|
| Symbol | secD |
|---|
| ID | 7291082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | + |
|---|
| Start bp | 5221227 |
|---|
| End bp | 5222621 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643588085 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_002485782 |
|---|
| Protein GI | 220910471 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.473691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAC AAAGATTTTT GCTGGCTTTG ATCTTGCTGC TGTTGCTGGG ATCATTGCTG
ATCATCTTCC GTTACCCTGT GCGGTTGGGA TTAGATCTAC AGGGAGGTGC GCAATTAACC
CTGCAGGTCA AGCCCACGGA TAAGGTACGG ACGATTACCC CACAAGTGCT GGAAGCAGTT
CAGCGGGTCG TGGAAAACCG GATTAATGGT CTGGGGGTCT CTGAGGCACT GGTTCAGACG
GCCGGAGAAG ATAAATTGCT GGTGCAGTTA CCGGGGGTGA ATGATCCCCA ACAGGCGGAG
CGGGTCCTGC AGGGAACAGC CCAACTGGAC TTTCGCTTTC AAAAACCCGG TACAGAACAA
CAATTAGCGA TCGAGCAGCG CCTGCGGGCC GAATTACAGG TGAAACAGGC TGAGTTACAG
AAAAGCGGAG ATACGGCGGC ACTGGAGCAG AACCAGGCCA AGCTCAAAGA ATCGGATCAG
GCGATCGCTG CTCTGTATGA AAAAACGGGA CTGACTGGCG ACCTGTTGCG GGAAGCACTG
GCCACCCCCA CGGCCCCCGG TTCTTCCAGT TGGAGCGTGG TCGTTAGCTT TAATGCCAAA
GGCGGGGAGC TATTCGCCGA CTTGACCAAG CGGATTGCCG GTACGGGTCG AACCCTGGGC
GTTTTTCTCG ACGATCGCTT GATCACCAGC CCCATCGTCG ATGTCCGCTA TGCTGAAACC
GGAATTACCG GCGGAAGTGC TGAAATTACC GGCAACTTTA CCGCTCAAAG CGCCAATGAC
CTGGCCGTGC AATTACAGGG TGGGGCCCTG CCCGTTCCCC TGGAAGTGAT CGAAAACCGC
ACTGTGGGAG CAACGCTGGG ACAGGACAGT ATTCGCAGCA GTATCTATGC CGGCCTGGGA
GGCTTAATTC TGGTGCTGGT ATTTATGGCG GTTTATTATC GTCTGCCTGG AATTATTGCT
GACCTGGCCC TCACCCTTTA TGCCCTCCTC ACCTATGCCA TCTTTGTGCT CTTAGGGGTA
ACACTAACCC TGCCGGGGAT CGCTGGATTT ATTCTCAGTA TTGGCATGGC GGTGGATGCT
AACGTGTTGA TTTTCGAACG CACCCGTGAG GAACTCCGCA GTGGTAAATC TCTCTACCGT
TCCGTTGAAT CAGGCTTCTA CAGGGCTTTT TCCAGCATTC TCGATAGCAA TGTCACGACC
CTGATTGCCT GTGCAGCTTT ATTCTGGTTG GGGACAGGAC TGGTAAAAGG ATTTGCCCTC
ACCCTGGCGA TCGGGGTTGG GGTCAGTATG TTTACGGCGC TGACCTGTAG TCGAACCCTA
TTACTGACGG CTCTGGGCAT TGCCGGACTG CGGAAACCCC AGTTCTTCTG CCCCAAACTG
GAGGTGAGTC GATGA
|
|---|
| Protein sequence | MGKQRFLLAL ILLLLLGSLL IIFRYPVRLG LDLQGGAQLT LQVKPTDKVR TITPQVLEAV
QRVVENRING LGVSEALVQT AGEDKLLVQL PGVNDPQQAE RVLQGTAQLD FRFQKPGTEQ
QLAIEQRLRA ELQVKQAELQ KSGDTAALEQ NQAKLKESDQ AIAALYEKTG LTGDLLREAL
ATPTAPGSSS WSVVVSFNAK GGELFADLTK RIAGTGRTLG VFLDDRLITS PIVDVRYAET
GITGGSAEIT GNFTAQSAND LAVQLQGGAL PVPLEVIENR TVGATLGQDS IRSSIYAGLG
GLILVLVFMA VYYRLPGIIA DLALTLYALL TYAIFVLLGV TLTLPGIAGF ILSIGMAVDA
NVLIFERTRE ELRSGKSLYR SVESGFYRAF SSILDSNVTT LIACAALFWL GTGLVKGFAL
TLAIGVGVSM FTALTCSRTL LLTALGIAGL RKPQFFCPKL EVSR
|
|---|
| |