Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_3100 |
Symbol | dapF |
ID | 4809726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 3656550 |
End bp | 3657392 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640108528 |
Product | diaminopimelate epimerase |
Protein accession | YP_001039488 |
Protein GI | 125975578 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.239794 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGTTTA CCAAAATGCA TGGGCTGGGG AATGACTATA TATATGTTAA TTGCTTTGAA GAGACTGTCG AAAACCCTTC CGAAGTTGCG AAAAAGGTCA GCGACAGGCA TTTTGGCATT GGTTCCGACG GACTTGTACT GATAATGCCT TCAGAGAGGG CGGACTTTAA GATGAGAATG TTCAATTCGG ACGGTTCTGA GGCCGAAATG TGCGGAAATG CGATAAGATG TGTGGGGAAA TATGTATTTG ACCGGGGAAT GACGAATAAA AATGTTATAA GAGTAGAGAC GCTGGCAGGA ATAAAGGTTC TTGAACTGAC TGTGCAAGAT GGAAAGGCCA AACTTGTAAA AGTTGATATG GGGGAACCTA TATTGAAGCC GGAAAATATA CCGGTGAACA GTGACAAGGA GATTTTCAGG ACGGAGCCTG TTGAAATAGA CGGAAAAGAA TTTAAAGTCA CATGTGTGTC AATGGGAAAT CCCCATGCAG TATCCTATGT CAAGAATGTG GACATTTTTC CTCTTGAAAA AATCGGTCCT AAAATGGAAC ATCATCCTCT CTTTCCAAAA AGAATAAATG CCGAGTTTGT GGAAGTGATA GACAGAACCA CCCTGAAAAT GCGGGTTTGG GAAAGAGGCG CGGGGGAGAC TTTGGCATGC GGAACCGGTG CCTGTGCCGT GCTGGTGGCA TCGGTGCTGA ACGGTGTCAG TGAAAGGAAG GCAACTGTAA AACTTTTGGG TGGGGACCTT ATTATTGAAT GGAATGAGAA TAACAATCAT GTCTATATGA CGGGTCCGGC TGTTAAAGTA TTTGAAGGTG AAGTTGACTT GAACGAACTT TAA
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Protein sequence | MRFTKMHGLG NDYIYVNCFE ETVENPSEVA KKVSDRHFGI GSDGLVLIMP SERADFKMRM FNSDGSEAEM CGNAIRCVGK YVFDRGMTNK NVIRVETLAG IKVLELTVQD GKAKLVKVDM GEPILKPENI PVNSDKEIFR TEPVEIDGKE FKVTCVSMGN PHAVSYVKNV DIFPLEKIGP KMEHHPLFPK RINAEFVEVI DRTTLKMRVW ERGAGETLAC GTGACAVLVA SVLNGVSERK ATVKLLGGDL IIEWNENNNH VYMTGPAVKV FEGEVDLNEL
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