| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2744 |
|---|
| Symbol | |
|---|
| ID | 4810246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 3238676 |
|---|
| End bp | 3239362 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640108163 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001039136 |
|---|
| Protein GI | 125975226 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAGTCA GCGATATATT TCAACAAAAA CTAAATGAAA TTCAAAGCCG GGTTCCGCTT
AAGATAGCCA AAAGTTCCAC AAGTTTCAGC AAGGTACTGA ATGATGTAAT AGAAAATAGC
AGTGAAACCG CTGAAGATTT CGGAATCTTT AAAGTTCAAC CTTATACCAT GATAAGTTCG
GCCTCAACAT CAAAAGCAGT GGACAAAGAA GGCAATGACA GAAGTGCAGA CGTTCAGAGA
GCCAAACTTT CTCGTGCCCG CAGTACCGCA TATATCCCTG AGGACAAAAA TGCCCGCATG
GAATTGATAA ACCGGTGTAT TGAAAATGCT TCGGCAAAAT ACGGTGTCGA TAAAAATCTG
ATTAGAGCAA TAATCAAACA GGAATCAAAT TTCGACCCTT ATGCTCTTTC TCACTCGGGT
GCCCAAGGTT TAATGCAGCT GATGCCTGGA ACGGCAGATG CCTTAAATGT CAGTGACCCT
TGGGATATTG CACAGAATAT CGACGGCGGA ACAAGGTATA TCAGGGATCA GCTCGCAAGA
TTTAACGGCG ATGTTGTTCT TGCCCTTGCA GCATACAATG CCGGCCCGTA CAATGTTATC
AAGTATGGTG GTATTCCTCC TTTTGCCGAA ACCCAAAATT ACGTTAAAAA AGTAATGGAA
TACTACACTT TGTATTCGGG TGGATAA
|
|---|
| Protein sequence | MRVSDIFQQK LNEIQSRVPL KIAKSSTSFS KVLNDVIENS SETAEDFGIF KVQPYTMISS
ASTSKAVDKE GNDRSADVQR AKLSRARSTA YIPEDKNARM ELINRCIENA SAKYGVDKNL
IRAIIKQESN FDPYALSHSG AQGLMQLMPG TADALNVSDP WDIAQNIDGG TRYIRDQLAR
FNGDVVLALA AYNAGPYNVI KYGGIPPFAE TQNYVKKVME YYTLYSGG
|
|---|
| |