| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2096 |
|---|
| Symbol | |
|---|
| ID | 4810956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2491872 |
|---|
| End bp | 2493836 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640107503 |
|---|
| Product | methionyl-tRNA synthetase |
|---|
| Protein accession | YP_001038496 |
|---|
| Protein GI | 125974586 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0073] EMAP domain
[COG0143] Methionyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase
[TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAA AGACTTTTTA CATTACAACG CCCATTTATT ACCCGAGCGA CAAGTTACAT
ATAGGCCACT CATACACTAC TGTTGCGGCG GATGCCGTGG CAAGATACAA AAGGCTGAAA
GGTTACGATG TAATGTTTCT TACGGGAACG GATGAGCATG GACAGAAGAT TGAACGCAAG
GCGAAGGAAA AGGGAGTTAC CCCGAAACAG TATGTGGATG AAATTGTGGC CGGAATCAAG
GAACTGTGGA AGCTTTTGAA AATAACCAAC GACAGGTTTA TCAGAACGAC GGATCCCCAC
CATGAGAAGA CTGTGCAGAA GATATTTAAA AAGCTCTACG ACCAGGGAGA TATTTACAAG
AGTGAATATG AAGGCTGGTA TTGCACTCCT TGTGAGTCTT TCTGGACGAA GACACAGCTG
GTTGACGGAA AATGTCCCGA CTGCGGAAGG GAAGTGGAAC TTACAAAAGA GGAGAGCTAT
TTCTTCAGGC TTTCCAAATA TCAGGACCGG CTGATAAAAC ATATCGAGGA GAATCCGGAT
TTTATACAGC CTGTTTCCAG ACAGAACGAG ATGCTGAACA ATTTCTTAAG GCCGGGGCTT
GAAGACCTTT GCGTGTCCAG AACCACCTTT GACTGGGGAA TACCGGTGTC CTTTGATGAC
AAGCACGTGG TATATGTTTG GATTGACGCC CTTTCCAACT ATATTACCGC CCTTAACTAC
ATGTCCGAGG ACGATTCGGA TTACCGCAAG TACTGGCCTG CGGATGTTCA TCTTGTGGGA
AAGGAAATAG TGCGTTTCCA CACCATCATA TGGCCTGCAA TGCTCATGGC TTTGGGTGAG
CCTTTGCCGA AGCAGGTATT TGGCCATGGC TGGCTCCTTC TTGAGGGCGG AAAAATGTCC
AAGTCCAAGG GAAATGTGGT CGATCCTGTT GTGCTTGTTG AAAAGTACGG TGTTGACGCG
ATAAGGTATT TCCTCTTAAG AGAGGTTCCT TTCGGTTCGG ACGGAGTATT TTCAAATGAA
GCATTGATAA ACAGGATTAA TTCAGACTTG GCAAACGACC TTGGAAATCT TGTCAGCAGG
ACCGTTGCCA TGATTGACAA ATATTTTGGA GGGAAGCTGC CGCAGGAAAG ACAGGCGGGA
GAATTTGACG ACGACCTTAT AAAGACTGTG ACGGATACAC CTCAAAAGGT TGAGGAACTG
CTTGACCGTT TGCAGTTCAG TACGGCGCTT ACTGAAATCT GGAAAGCCAT TTCCAGAACC
AACAAGTATA TTGACGAGAC AATGCCGTGG GCACTGGCAA AAAGTGAAGA AAACAAGGCA
AGACTTGCCG CTGTTTTATA CAATCTTGCG GAAAGTATCA GAATAGTTTC CATACTCATA
CAGCCGTTTA TGCCTGAAAC TCCTGAAAAG ATATGGCATC AGCTGGGTAT AAACGACAAA
AAGTATGTGG AGTGGGAAAC TGCAAAGAAA TGGGGAGTAT ATCCTGAAGG TGCCGCTGTG
AACAAAGGAG AACCCTTGTT CCCGAGAATT GATGTTAAGA AAGAGCTGGA GGAATTGGAA
AAGCTCACTT TGGCTGCGGC TGAAAATAAG GAAAAGCAAT CACCGAAGCA GGAAACGGAG
AAAAAGGATG CGGAAAAGAA TGAATATATC ACCATAGAGG ATTTTGAGAA GCTGGATTTG
AGGGTTGGCA AGGTTCTTGA GGCTCAGAAG GTTGAAAATG CCGACAAGTT GCTGAAACTA
AAGATTGAAG TTGGCAATGA AGTACGCCAG GTGGTGTCCG GTATTGCAAA GTACTACTCT
CCGGAGGAAT TAAAGGGTAA ATACGTTGTG CTGGTGGCAA ACTTAAAGCC GGTAAAACTC
AGGGGAATAG AGTCGCAGGG TATGATTCTT GCCGCTTCGG ATGACAAGGA CCTGGTACTG
GTGACGATTG ACAAAGAGAT AAACAGCGGA ACCAAGGTTC AGTAA
|
|---|
| Protein sequence | MDRKTFYITT PIYYPSDKLH IGHSYTTVAA DAVARYKRLK GYDVMFLTGT DEHGQKIERK
AKEKGVTPKQ YVDEIVAGIK ELWKLLKITN DRFIRTTDPH HEKTVQKIFK KLYDQGDIYK
SEYEGWYCTP CESFWTKTQL VDGKCPDCGR EVELTKEESY FFRLSKYQDR LIKHIEENPD
FIQPVSRQNE MLNNFLRPGL EDLCVSRTTF DWGIPVSFDD KHVVYVWIDA LSNYITALNY
MSEDDSDYRK YWPADVHLVG KEIVRFHTII WPAMLMALGE PLPKQVFGHG WLLLEGGKMS
KSKGNVVDPV VLVEKYGVDA IRYFLLREVP FGSDGVFSNE ALINRINSDL ANDLGNLVSR
TVAMIDKYFG GKLPQERQAG EFDDDLIKTV TDTPQKVEEL LDRLQFSTAL TEIWKAISRT
NKYIDETMPW ALAKSEENKA RLAAVLYNLA ESIRIVSILI QPFMPETPEK IWHQLGINDK
KYVEWETAKK WGVYPEGAAV NKGEPLFPRI DVKKELEELE KLTLAAAENK EKQSPKQETE
KKDAEKNEYI TIEDFEKLDL RVGKVLEAQK VENADKLLKL KIEVGNEVRQ VVSGIAKYYS
PEELKGKYVV LVANLKPVKL RGIESQGMIL AASDDKDLVL VTIDKEINSG TKVQ
|
|---|
| |