| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1962 |
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| Symbol | |
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| ID | 4810745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 2339325 |
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| End bp | 2340287 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640107378 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001038373 |
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| Protein GI | 125974463 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000134652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTACGA TAACAATTAC GGAAGACAAG GCAAACAAAA GAATTGACAA AGTTTTAAGA
GAAACTTTTC CAAGGCTCCC CAACGGAGCC TTGTTTAAAG CCTTTCGCAA AAAGGACATA
AAGGTAAATG GCGTGCGGGT TAAAGAGGAC CACATTGTAA AGCTCAATGA CAGGGTTGAC
ATATATATCA TTGATGAAAT TTTGGACGGC GTGCCCAAAG CGGGAGAACT TAATTATGAA
ACGGCATTTT CGGTCGCCTA TGAAGACAGC AATCTTTTAA TCGTAAACAA AAAACAGGGC
ATACCCGTGC ATCCCGACAG GACACAGACG GAGAATACGC TTATCGATTT TGTAAAAGAG
TACCTTAAGC TAAAGGGTGA ATTTGAAGAA AATTCCGGAT TTACCCCTTC CCTTTGTCAC
AGGCTTGACC GCAACACAGG CGGTCTTGTT ATGATAGCAA AAAACAGCTC CACTCTTCAT
ATGGTGCTCA AAAAGATGAA AAGCGGAGAA ATCAGCAAGT ACTACCAGTG CCTTGTCAAA
GGGAAAATGG AAAAAAAAGA GGATATTTTA AAAGCATACC TTGAAAAAGA CGAGAAGAAA
AGCAGAGTTT TCATCAAGGA CACAAAGTCA AAAAACGCAG TTGAGATAAT TACAGGATAT
AAAGTGCTTT CTTACAAGGA ACTTCCGGAT ATCGGTGAAG GTATCAGCAA CCTTGAGGTT
ACGCTTTACA CCGGCCGCAC CCATCAAATC CGGGCCCACC TTGCCCATAT CGGACATCCT
GTTGTGGGCG ACGGCAAATA CGGAATCAAC ACCTTCAACC GTCTTTTAGG TGCCAAATAT
CAGGCTTTAT GGGCGTACAA GCTAAAGTTC GATTTTAAAA GCGATGCCGG GATTTTGAAT
TACTTAAGGG GAAAGGTAAT ACAGGTACAG CCGGAGTACA AGCTCTCAAA GTCATGGAAA
TAA
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| Protein sequence | MRTITITEDK ANKRIDKVLR ETFPRLPNGA LFKAFRKKDI KVNGVRVKED HIVKLNDRVD
IYIIDEILDG VPKAGELNYE TAFSVAYEDS NLLIVNKKQG IPVHPDRTQT ENTLIDFVKE
YLKLKGEFEE NSGFTPSLCH RLDRNTGGLV MIAKNSSTLH MVLKKMKSGE ISKYYQCLVK
GKMEKKEDIL KAYLEKDEKK SRVFIKDTKS KNAVEIITGY KVLSYKELPD IGEGISNLEV
TLYTGRTHQI RAHLAHIGHP VVGDGKYGIN TFNRLLGAKY QALWAYKLKF DFKSDAGILN
YLRGKVIQVQ PEYKLSKSWK
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