| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1649 |
|---|
| Symbol | |
|---|
| ID | 4809344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1974489 |
|---|
| End bp | 1975286 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640107064 |
|---|
| Product | BRO-like protein |
|---|
| Protein accession | YP_001038065 |
|---|
| Protein GI | 125974155 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3617] Prophage antirepressor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000543299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATT TACAGGTTTT TAAGAATACA GAATTTGGAG AACTTAAAGT ACTCGTTATT
GATGGAAAGG AATACTTTCC TGCAACGGAT TGTGCAAGGA TGCTGGGATA CAGTAACCCA
CACAAGGCAG TAATAGATCA TTGTAAGTAC CTAACAAAAC GTGAGGTACC TCATCCGCAA
AATCCTGAAA AAACCATCAA CATAAATTAT ATTCCCGAAG GTGATTTGTT CCGGTTGATA
GTTAAATCCC AACTTCCTGC AGCTGAACGC TTTGAGAAAT GGGTCTTTGA TGAAGTGCTG
CCCACGATCA GAAAATATGG AGTTTATGCT ACAGATAAAG TTATCGAAGA GATGATTTCT
AATCCGGAGT ATGGCATCAG GATTTTCTCT GAACTAAAGG CAGAACGCGA CAGGCGGAAA
GCTTTAGAAA TAGAAAATGC AAAGAATAAA CAGATTATCA GTGAGTTGAA GCCCAAAGCG
AGCTATTATG ATCTCATATT GCAAAATAAA AGCCTTGTGC CGATCAGCAA GATTGCCAAG
GATTACGGAA TGTCTGGCCG CGCTTTCAAT AAGCTGCTTC ATGAGCTTGG AGTACAGTAC
AAAATGGGAA ACTGCTGGCT TTTATATCAG GAGTACGCCG ATCAAGGATA CACGCAGTCC
AAGACTCATG CTATTGATGC AGAAAGAAGC GTAATGCACA CATATTGGAC ACAAAAAGGA
AGGCTATTTA TCTATGACCT TCTTAAAAAC AAGAAAGGTA TATTGCCTGT AATCGAACGT
GAACAAAAAA GCGCATAG
|
|---|
| Protein sequence | MTNLQVFKNT EFGELKVLVI DGKEYFPATD CARMLGYSNP HKAVIDHCKY LTKREVPHPQ
NPEKTININY IPEGDLFRLI VKSQLPAAER FEKWVFDEVL PTIRKYGVYA TDKVIEEMIS
NPEYGIRIFS ELKAERDRRK ALEIENAKNK QIISELKPKA SYYDLILQNK SLVPISKIAK
DYGMSGRAFN KLLHELGVQY KMGNCWLLYQ EYADQGYTQS KTHAIDAERS VMHTYWTQKG
RLFIYDLLKN KKGILPVIER EQKSA
|
|---|
| |