| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1599 |
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| Symbol | |
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| ID | 4809590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1930261 |
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| End bp | 1931931 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640107017 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001038018 |
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| Protein GI | 125974108 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.928385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA GTATTTATAA AAGCATGCTG GTATTGGCCC TTACAACTAT TTTACTTACC
TCGTTTCTTA TAACCGGAGT GATGTACCGG GCATTCTATC TCAGGATGCA GCAAGAAATC
AGGAATGAAG CCATTTTTAT ATCATCCGCT TACAATCTAA TCGGACAAGA GTTTTTTTCT
AGCATTGCAG ATCAAGAAAG CTCTAGCAGG ATTACATGGG TAGCTAGTGA CGGTACTGTT
TTGTTTGATA ATATGGCTGA TGCAGAAAAG ATGGAAAATC ACCTCAACAG GCCGGAAATT
GCCGATGCGT TGAAAAACGG ATTTGGTGAA GCAGTTCACC TTTCCAAAAC TCTAGGAACT
CAGACCTTTT ATTGGGCTGT CCGACTTAAT GACGGCACAG TCCTAAGAGT ATCAGCCACG
ACTAATAGTG TTTTTAAATC TGTTTTAGGT TTTTTTCCGT ATGTCGCTTT AATCACATTG
ATGGTTATCT TGCTGACCAT GATCATTGCC AACCTGTTGA CGAAAAAAAT CTTTCTTCCT
TTGAACAATT TAAATTTGGA GGATCCGTTG TCCAATGATG TCTATGACGA ATTGTCTCCA
TTGCTAATTC GCATGGCTAA ACAAAATGAT CAGATTAAAA GTCAGTTCAA AAAACTGAAA
GAGCAGAAGG AAGAGTTTAA TGCAATTACG GAGAATATTA GAGAGGGAAT CATAGTTTTA
AACAACAAAG GCTTGATATT ATTCATAAAC AAAAGTGCCG CAGACATATT CAATGTCAGT
ACTCAGGATA TAATTAACAA GCATATATTA ACACTTGATC GAAGCATAAC TCTTCAAAAG
GCAATAGAGA CAGCTATGGG AGGGCATTTA TTTGAGGATA TATTTGCCAT AGGTGAAAAT
TCTTTTAATT TACTGGCTAG CCCTGTTAAG GATGAAGTGG TTGTCAAAGG AGTTATTCTG
TTTATATTGG ATGTAACAGA AAAACAATCC GCCGAAAAAA TGCGCCGTGA GTTTGCCGCT
AATGTGTCGC ATGAACTTAA AACGCCTCTC ACCTCTATTT TAGGTTACGC AGAGCTTATG
AAAAGCGGCA TGGTAAAACC TGAAGACATT TCCGAGTTTT CCGACCGCAT ATACAACGAA
GCAAGGCATC TCATAGACTT GATAGAAGAT GTGATACGGA TCTCCAGACT GGATGAAAAA
AATGTTCAGC TCCCCTTTGA AGAGATTGAT TTATTGGAAT TGGCAAAAGA AACAGTCGGC
AGATTATCTT CCCTTGCACA GCAGAAACGG ATAAAGCTAT CAGTCGGCGG TGATAACGCG
ATCATTTTTG GTGTTAGACA AATTCTGGAG GAGATGATCT ATAATCTTTG TGATAACGCA
ATCAAATACA ATTATGAAAA CGGCAAGGTT GATGTAAATG TAAAAACTTT CTCCGACCAG
GTTGTACTAA CCGTAGCCGA TAATGGCTTT GGCATTCCGA GGGAGCATCA AAGCCGCGTG
TTTGAACGCT TTTATAGAAT CGACAAGTCC CATTCAAGGG AAACCGGTGG AACTGGTCTG
GGCCTTTCTA TTGTAAAGCA CAGTGCCGAA TTCCATAATG CAAAGATTCG ATTGATGAGC
AAGCCTGGAA AGGGTACAAC GATTACAGTT ATATTTAGTC GTGAACAATA G
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| Protein sequence | MKKSIYKSML VLALTTILLT SFLITGVMYR AFYLRMQQEI RNEAIFISSA YNLIGQEFFS
SIADQESSSR ITWVASDGTV LFDNMADAEK MENHLNRPEI ADALKNGFGE AVHLSKTLGT
QTFYWAVRLN DGTVLRVSAT TNSVFKSVLG FFPYVALITL MVILLTMIIA NLLTKKIFLP
LNNLNLEDPL SNDVYDELSP LLIRMAKQND QIKSQFKKLK EQKEEFNAIT ENIREGIIVL
NNKGLILFIN KSAADIFNVS TQDIINKHIL TLDRSITLQK AIETAMGGHL FEDIFAIGEN
SFNLLASPVK DEVVVKGVIL FILDVTEKQS AEKMRREFAA NVSHELKTPL TSILGYAELM
KSGMVKPEDI SEFSDRIYNE ARHLIDLIED VIRISRLDEK NVQLPFEEID LLELAKETVG
RLSSLAQQKR IKLSVGGDNA IIFGVRQILE EMIYNLCDNA IKYNYENGKV DVNVKTFSDQ
VVLTVADNGF GIPREHQSRV FERFYRIDKS HSRETGGTGL GLSIVKHSAE FHNAKIRLMS
KPGKGTTITV IFSREQ
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