| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1302 |
|---|
| Symbol | |
|---|
| ID | 4809554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1579458 |
|---|
| End bp | 1581125 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640106725 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001037727 |
|---|
| Protein GI | 125973817 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
|---|
| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAAAA AGAAGAGAAA GTTAAAAGTC ATACCCCTTG GCGGATTGGG GGAGATAGGA
AAAAACATTA CTGTTTTTGA ATATGGCGAT GATATATTTG TGGTTGACTG CGGTATTGCT
TTCCCGGAAG ACGATATGCT GGGAATAGAT CTTGTTATAC CGGATATATC ATATCTGACC
AAGAACAGGG AAAAGGTGAG AGGTATAGTT CTTACCCACG GACATGAGGA TCATATTGGT
GCATTGCCTT ATGTTCTGAA GGATTTGAAC GTACCCGTAT ACGGCACAAA GCTTACTTTG
GGACTTTTGG AGCAAAAACT TGAAGAGCAT GGGCTTTTAA ACAATGTGGT TCTCAATGTT
GTCAAACATT CCGATGTGAT AGAACTGGGA TGTTTCAAGG TTGAATTTAT CCGGTCAACT
CACAGTATAG CAGACTCAAC GGCTTTGGCT ATTTTTACCC CTGTGGGTAC AATTTTTCAT
ACCGGAGATT TCAAAATTGA TTACACGCCC ATAGAGGGTG AGCCCATTGA TCTGGCAAGG
CTTGCTGAAC TTGGGAAAAA AGGTGTGCTG CTTCTTATGT GTGACAGCAC CAACGTTGAA
AGAGAAGGCT ATACAATGTC GGAGAAAACC GTTGGAGAAA CCTTTGATGA GATTTTCATG
AATGCAAAGA ACAGGATACT TGTAGCAACC TTTGCGTCCA ATGTTCATCG AATTCAGCAA
ATTGTCAATG CTGCAATCAA ATTCGGAAGA AAAATCGCCA TATGCGGAAG AAGCATGGTC
AATGTCGTAA ATGTTGCCAT GGAACTTGGC TATATGAATG TACCCGAAGG GCTGATTATT
GATATAGACC ACATAAACAA ATATCCGCCT GAAAAGATAG TGATAATCAC TACGGGAAGC
CAGGGAGAAC CAATGTCAGC CCTGACGCGA ATGGCTTCCG GTGACCATAA GAAGGTTGAA
ATCATACCAG GCGACCTTGT TATTATTTCC GCAAATCCCA TACCCGGAAA TGAAAAACTT
GTTTCAAGAG TGGTAAATGA CCTTTTCAAA AAGGGTGCGG AAGTTATATA CGAATCTTTG
GCAGATATTC ATGTTTCAGG TCATGCGAGC CAGGAAGAGT TAAAGCTTAT CCACAGACTG
ATAAGGCCAA AGTACTTTAT GCCGGTGCAT GGTGAGTACA GGCATTTGAA GCGCCATGCA
AATCTTGCCG TTGAGCTGGG AATGTCGCCC GAAAACATTT TTATCATGGA TATTGGAAAA
GTCCTGGAGC TTACCAATGA CTCTGCGAAG ATAAACGGCA GTGTGAATGC CGGAAGAGTG
CTGGTTGACG GTCTTGGAGT GGGAGATGTG GGAAATATAG TCTTAAGGGA CAGAAAACAT
TTGTCTCAGG ACGGACTTAT AGTTGTGGTT ATTACCATAG AAGGAGATAC CGGCAATGTA
ATTGCAGGAC CTGATGTGAT ATCCAGAGGT TTTGTATATG TGCGGGAATC CGAAGACCTC
ATGGAAGAAA TAAGAGAAGT GTGCAAAGCT GCGCTTCAAA AATGCAATGA CAAGAAAAAG
AATGACTGGT CTACGAAGAA AAGCATTATA AGAGATGCCT TAAGAGACTT TCTCTATGAG
AGAACCAAGA GAAGGCCGAT GATTCTGCCA ATAATCATGG AAGTGTAA
|
|---|
| Protein sequence | MAKKKRKLKV IPLGGLGEIG KNITVFEYGD DIFVVDCGIA FPEDDMLGID LVIPDISYLT
KNREKVRGIV LTHGHEDHIG ALPYVLKDLN VPVYGTKLTL GLLEQKLEEH GLLNNVVLNV
VKHSDVIELG CFKVEFIRST HSIADSTALA IFTPVGTIFH TGDFKIDYTP IEGEPIDLAR
LAELGKKGVL LLMCDSTNVE REGYTMSEKT VGETFDEIFM NAKNRILVAT FASNVHRIQQ
IVNAAIKFGR KIAICGRSMV NVVNVAMELG YMNVPEGLII DIDHINKYPP EKIVIITTGS
QGEPMSALTR MASGDHKKVE IIPGDLVIIS ANPIPGNEKL VSRVVNDLFK KGAEVIYESL
ADIHVSGHAS QEELKLIHRL IRPKYFMPVH GEYRHLKRHA NLAVELGMSP ENIFIMDIGK
VLELTNDSAK INGSVNAGRV LVDGLGVGDV GNIVLRDRKH LSQDGLIVVV ITIEGDTGNV
IAGPDVISRG FVYVRESEDL MEEIREVCKA ALQKCNDKKK NDWSTKKSII RDALRDFLYE
RTKRRPMILP IIMEV
|
|---|
| |