| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1207 |
|---|
| Symbol | |
|---|
| ID | 4809899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1440596 |
|---|
| End bp | 1442119 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106630 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001037632 |
|---|
| Protein GI | 125973722 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5305] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.347408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA AGATTCCCAA ATTGGACTAC AAATCTATTA TCATCTGGTC CGTTATTCTA
ATCGCAGGTT TTTGGTATCT AACGAGAGGA ATCAGTCATG AAACTCTCTG GTACGATGAA
TCTTATTCGG CCGCCATTAT CAACCATTCA ATACCTGATA TAATCAGAAT TACTGCAAAC
GACAGTCACC CGCCTTTATA TTTTATAATG CTCAAAATTT TCAGTTCTGT GTTTGGACGC
ACTGAATCGG CACTAAGACT TTTTTCGGTA TTGGGATTGC TGGCTTTGGC AACTCTTGGC
GCAGGTCCGG TAAGACGGGT GTTTGGCAAA TTCATGGGTA TGATGTATTC ATTCTGTGTA
ATTGCCGTCC CCATAAGCCT GTCAATAGGC CAGGAAACAA GGATGTACAC ATGGGCGGCT
TTTTTTGTCA CAGCCGGCGC TTTGTACGGA TATCTTGCAT TGCAGGAAAA CAAAAGGTCC
GATTGGATTA AGTTTGGACT GGCCACCCTG GCATCCGCTT TTACTCATTA TTACGCACTG
CTTGCCGTTA CTGTTTTAAA TGTACTGCTC TTTGTCTGGC TGCTTTTAAG ATTCATAACC
ACCAAAGATA AAAAGAAGTT TACAAGTTAC TTAATTACTG CAGGAGCTGT AGTACTGTGC
TATTTTCCGT GGATTTTTAT ATTATTCGGT CAAGCAAAAA AGGTTTCCAA ATCTTTCTGG
ATACCGCCCG TCACGAAAGA TGTCATCTGG TATACTTTAC AGTATCCCTT TGCAGCCAAG
TTCTGGACAT TTAGATTCTC AAGAGTATGT TTTATCTGTG CAGTCGTACT CATACTATGG
GGATTGATAT TCTCGGTAAT AAAACGCAAA AAGCAAGGGT TAATGTCTTT GCTTGCAGTG
TTGATATATA CTTTGACCCT GGTAAGTGCA ATTGTTCTTT CCAATGTAAT AAGGCCTCTT
TTGGTGGAAA GATACATATT CCCGGTTGTC GGACTGTTTG TTCTGGCCTT TGCATACGGA
ATATCCATGC TCAACAGCAA AGGTGCTTCA ATATTCGTTT GCGTGGCATT ATTGGCCGTT
TCAATTTCGC AAAACCAGTT GATTATCGAG AAAAGATTTA ACGGTCCGAT GAAAGAAGTA
TGCAGTTATA TCAATAGCCA GAATATAACT CCGGAAGACG TTTTTATTCA CACAGATGAA
CATACATTTG GAACATTTTG TTATTATTAT CCCAACAACA AGCATTATCT TTACCTTCCT
CCCGACTTCG ACGGATACAG CGGATATGAT GCTTTTTCAC CTGCCGGCTC CTACGGTTCG
GACATCAAAG AATTTATAGA CGGCCGGGAA AAAATATGGT TTGTGGAACG TGAAGGATCC
GACATGAGTA AACAAGGGTC CAAATTGCTC GATAAACATA TTTTGCAAAG CAGAGGCATG
ATTCTTAAGT TCAACCTTTA CCCGCATTCT TTCTACGCTG TTACTTTAAG GAGGGTTGTT
CCCGGAAATG CATTAAAAGA TTAA
|
|---|
| Protein sequence | MKFKIPKLDY KSIIIWSVIL IAGFWYLTRG ISHETLWYDE SYSAAIINHS IPDIIRITAN
DSHPPLYFIM LKIFSSVFGR TESALRLFSV LGLLALATLG AGPVRRVFGK FMGMMYSFCV
IAVPISLSIG QETRMYTWAA FFVTAGALYG YLALQENKRS DWIKFGLATL ASAFTHYYAL
LAVTVLNVLL FVWLLLRFIT TKDKKKFTSY LITAGAVVLC YFPWIFILFG QAKKVSKSFW
IPPVTKDVIW YTLQYPFAAK FWTFRFSRVC FICAVVLILW GLIFSVIKRK KQGLMSLLAV
LIYTLTLVSA IVLSNVIRPL LVERYIFPVV GLFVLAFAYG ISMLNSKGAS IFVCVALLAV
SISQNQLIIE KRFNGPMKEV CSYINSQNIT PEDVFIHTDE HTFGTFCYYY PNNKHYLYLP
PDFDGYSGYD AFSPAGSYGS DIKEFIDGRE KIWFVEREGS DMSKQGSKLL DKHILQSRGM
ILKFNLYPHS FYAVTLRRVV PGNALKD
|
|---|
| |