| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1177 |
|---|
| Symbol | |
|---|
| ID | 4810129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1404596 |
|---|
| End bp | 1406056 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640106599 |
|---|
| Product | nicotinate phosphoribosyltransferase |
|---|
| Protein accession | YP_001037602 |
|---|
| Protein GI | 125973692 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1488] Nicotinic acid phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01513] putative nicotinate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0494715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA TCAATTGGAA TCAAAGTGAA AACCTAAGCA TGCTCACTGA CTTTTATGAG
CTTACAATGG GAAACGGTTA TTTTGAAAAC GGAATCGGGG ACAGAATTGC TTACTTTGAC
ATGTTTTTCA GAAGAGTTCC GGAAAACGGC GGATTTGCCA TAATGGCGGG CTTGGCCCAG
GTTATTGAAT ATATAAACAA CCTTAAGTTT GAGGATGATG ATATTGAGTT TTTAAGAAGC
AAGGGGATAT TCAGTGAAGA CTTTTTAAAA TACCTCAAAG ATTTTAAGTT TTGCTGCGAT
ATATGGGCGA TACCCGAGGG AACTCCGATT TTTCCCAATG AACCTATTAT AACGGTAAGG
GGACCGGTTA TTCAGGCACA GTTTATAGAA ACAATGATTT TACTCACGAT CAATCATCAG
AGCCTTATAG CCACCAAAGC CAACAGGATT GTAAGAGCTG CACAGGGAAG GCCTGTGCTG
GAATTTGGCA CCAGAAGGGC CCAGGGTTAT GACGGAGCTG TGCTTGGAGC AAGAGCGGCA
TATATCGGAG GATGTGCCGG TACTGCATGT GCCATAGCCG ACAGAGATTT TGGTGTACCT
GCTTCGGGTA CAATGGCTCA CAGCTGGGTT CAGCTTTTTC CTTCGGAGCT GGAGGCTTTT
AGAGCCTATG CGAGAGTATA TCCTGACAAC TGCGTTCTTC TTGTGGATAC ATATAATGTG
TTAAAATCAG GGGTGCCCAA CGCCATTAAG GTATTTAAAG AAGAAGTTGT GCCAAGAGGG
TTCAGACCCA AGGGAATCAG AATTGATTCG GGGGATATTG CGTATCTTTC GAAAGAAGCA
AGAAAAATGC TTGATGAGGC AGGATTCCCC GATTGCAAAA TTGTTGTCTC CAATTCGCTT
GATGAATATA TAATCAGGGA TATATTGCAG CAAGGAGCAC AGGTTGACAT TTTCGGTGTT
GGTGAGAGGC TGATAACTTC AAAAACCGAA CCTGTTTTCG GAGGAGTATA TAAACTTGTG
GCGGTGGAAG AAAACGGGAC TATAATACCG AAAATAAAAA TGAGTGAAAA TGTGGTAAAG
ATAACAAACC CCGGATACAA AAAAGTTTTC AGATTGTTTG ACAGAAAGAA CAACAAAGCT
ATAGCAGATG TTATCGTAAA TGCGGGTGAA GTCATTGACG ACAGCAAACC TTATGAGATT
TTCGACCCGG ATCATACATG GAAGAGGAAA ACTGTGACCG ATTTTTATGC AAAGGAGCTC
CAGGTCCAGA TTTTCGATAA AGGAAAATGT GTATATAAAG TACCTGAAAT AAATGAAATC
AGAGATTACT GCAGAGAACA GATTAACACC CTCTGGGATG AGGTGCTCAG GTTTGAAAAT
CCGCACAAAT ATTATGTAGA CTTGAGTGAA GAATTGTGGA ATATCAAGAA TAAGCTGCTT
AAAGAGCATA CTTTATTATA A
|
|---|
| Protein sequence | MKKINWNQSE NLSMLTDFYE LTMGNGYFEN GIGDRIAYFD MFFRRVPENG GFAIMAGLAQ
VIEYINNLKF EDDDIEFLRS KGIFSEDFLK YLKDFKFCCD IWAIPEGTPI FPNEPIITVR
GPVIQAQFIE TMILLTINHQ SLIATKANRI VRAAQGRPVL EFGTRRAQGY DGAVLGARAA
YIGGCAGTAC AIADRDFGVP ASGTMAHSWV QLFPSELEAF RAYARVYPDN CVLLVDTYNV
LKSGVPNAIK VFKEEVVPRG FRPKGIRIDS GDIAYLSKEA RKMLDEAGFP DCKIVVSNSL
DEYIIRDILQ QGAQVDIFGV GERLITSKTE PVFGGVYKLV AVEENGTIIP KIKMSENVVK
ITNPGYKKVF RLFDRKNNKA IADVIVNAGE VIDDSKPYEI FDPDHTWKRK TVTDFYAKEL
QVQIFDKGKC VYKVPEINEI RDYCREQINT LWDEVLRFEN PHKYYVDLSE ELWNIKNKLL
KEHTLL
|
|---|
| |