Gene Cthe_0722 details

Gene Information

• Locus tag: Cthe_0722
• Symbol: mnmA
• ID: 4810340
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 876310
• End bp: 877389
• Gene Length: 1080 bp
• Protein Length: 359 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640106139
• Product: tRNA-specific 2-thiouridylase MnmA
• Protein accession: YP_001037150
• Protein GI: 125973240
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
• TIGRFAM ID: [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.161158
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGA AGAAGGTTAT GGTAGGCATG AGCGGCGGCG TTGACAGTTC TGTAGCTGCC 
GCCATACTTT TGGAACAGGG ATATGAGGTT ATCGGAGCCA CAATGCAAAT TTGGCCGGAT 
ACAGATGAAG AAACAAAGCT TGTTGAAGGC GGATGCTGTT CGCTTTCTGC CGTTGATGAT 
GCAAGGAGCG TTGCCAATAA ATTGGGAATC CCCTATTATG TTTTAAATTT TAAAGACATT 
TTTGAAAAAA GTGTTATTAA CTACTTTAAA GACGAATATC TAAAGGGGAG AACCCCGAAT 
CCTTGTATTG CGTGCAACAG GTTTGTGAAA TTTGAATCAA TGCTGAACAA AGCCCTGTCG 
ATGGGTATTG ACTATATTGC CACGGGGCAT TATGCAATTA TAACTTATGA CGATAATAAA 
AAAAGGTATC TGCTGAAAAA ATCGGTTACC CAGCAGAAGG ATCAGACCTA TGCCCTTTAC 
AATGTTACCC AGGAACAGCT TAAACATATT CTTATGCCCA TAGGCAATTT CACCAAGGAG 
CAGGTGAGGG CAAAAGCTAA GGAATTGGGG CTCTATGTTG CATCAAAGCC TGACAGCCAG 
GAAATCTGCT TTGTAAATGA CAATGACTAT GGAAAGTTTA TAGAAGAGAA TACCGACAAA 
GAAATTAAAC CCGGCTATTT TGTTGATACA AAAGGAAACA TATTAGGAAA ACACAGAGGC 
ATAATTCATT ATACGGTGGG ACAAAGAAAA GGCCTTGGTA TTGCTTTGGG AAAACCCATG 
TACGTTGTAA GAATCGATGC GGAAAACAAC ACCGTTGTGC TGGGTGATGA AAACGAAGTT 
TATTCAAAAG AACTTACAGC CTATGACTTA AACTTCATTT CAATAGACAA GCTTGAAGAG 
CCAATGAGAG TCAAGGCTAA AATACGTTAT TCCGCCAAAG AGGCTGATGC GGTTATTTAT 
CCTCTTGAAG ACGGCAAAGT CAGGGTTGTG TTTGACACTC CCCAGAGGGC TGTTACTCCC 
GGGCAGTCGG TAGTCTTTTA CGACGGTGAT ATAGTTGTCG GCGGAGGAAT AATCCAATAG 

 

Protein sequence

MSKKKVMVGM SGGVDSSVAA AILLEQGYEV IGATMQIWPD TDEETKLVEG GCCSLSAVDD 
ARSVANKLGI PYYVLNFKDI FEKSVINYFK DEYLKGRTPN PCIACNRFVK FESMLNKALS 
MGIDYIATGH YAIITYDDNK KRYLLKKSVT QQKDQTYALY NVTQEQLKHI LMPIGNFTKE 
QVRAKAKELG LYVASKPDSQ EICFVNDNDY GKFIEENTDK EIKPGYFVDT KGNILGKHRG 
IIHYTVGQRK GLGIALGKPM YVVRIDAENN TVVLGDENEV YSKELTAYDL NFISIDKLEE 
PMRVKAKIRY SAKEADAVIY PLEDGKVRVV FDTPQRAVTP GQSVVFYDGD IVVGGGIIQ