| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0274 |
|---|
| Symbol | |
|---|
| ID | 4808557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 339019 |
|---|
| End bp | 340710 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640105686 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001036706 |
|---|
| Protein GI | 125972796 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00113767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAA TAGCTGTATT GTTAATTACT TTGACGTTCT TAGTCACGAC TCTGTTTTCA
ATGTCATTTT CATCGGCAGC TGCAAGTCAT GATTATGCCA CCGCATTAAA ATACTCAATT
TTATTTTACG ACGCCAACAA ATGCGGTCCG GATGCAGCAG TTGACAATGT CTTCAGTTGG
AGAGGACCGT GTCACACGAC TGACGGAAGT GAAATAGGCC TGGATCTGAC CGGAGGATAT
CATGATGCCG GAGACCATGT CAAATTCGGT TTGCCCCAGG CTTATGCGGC AGCGGTACTG
GGTTGGTCAC TTTATGAATA CAAAGGAGTG TTTGACGCAA CAGGAAACAC CTCCAAAATG
CTCAGCACTC TCAAATATTT CACCGACTAT CTTTTAAAAT GTCATCCGGA CTCCAATACC
TTCTACTATC AAGTAGGAGA CGGTCAGGCA GACCATACAT ACTGGGGTGC GCCGGAAGTC
CAGCCGGGTC CGAGACCCGT ACCCTATGTT GCCAATGCCT CAAATGCGGC TTCTGATGTA
TGTGGTTTGA CATCCGCCGC TCTTACGATA ATGTACCTAA ACTACAAGGA TATAGACCAA
AACTATGCCA ACAAATGTTT AAAAGCTGCA AAAGAACTTT ATACAATGGC AAAAACCAAT
TTGGGCTACT ATGCCGAGAA TGCTTTTTAC ATCTCCCACT CCTACTGGGA CGATCTTTCC
TTTGCAGCCA CCTGGCTCTA TGTAGTGGAA AAAGACCCGA CTTACCTGAA GGAAATTGAC
AGCTATCTTT CAAATAAAAC CCTTTGGGGA GAGAGTCCTT TCAACAACAA ATGGACAATG
TGCTGGGATG ACATGTACAT GGCTGTCTTC TGCAAACTTG CAGAGATAAC AGGTGAACAA
AAGTACATTG ACGCAATGAA TTACAATCTC GATTACTGGA TGAATTCCCT TAATACAACT
CCCGGAGGCC TTAAGTATCT TGACAGCTGG GGAGTATTAA GATATGCGGC CGCCGAGGCC
TTTATCGCCA TGAGATACTA CGAGCTTACC AAAAATGAAG CATTAAAATC CTTTGCAAAA
TCTCAAATAG ACTACATACT TGGCAGCAAT CCCATCAACA TGTCCTATGT TATAGGTTAT
GGATCAAACT ACCCAAAATG TCCTCACCAC AGGGCAGCCA ACGGCTACAC TTACGCCAAC
GGTGACAATG CAAAACCTGC CAAAAACCTT CTTTTAGGTG CTTTGGTGGG CGGTCCGAAT
ATGTCTGACA ACTTTATCGA TGATGTCAAT CAGTTCCAGT TTACGGAAGT GGCTATTGAC
TATAATGCTG CTTTCGTGGG CGCTCTGGCT GCTATTGAAA AATACTACGG CAATATCGTT
ATACCCACTC CTCCAGCCAC TACACCCCCG TCTCCTACCG CAACGCCTTC CTTAATATGG
TGTGATGTCG GAGACTTAAA CGTTGACGGT TCAATAAACT CAGTAGACAT TACATACATG
AAAAGGTATC TTTTGCGCAG TATAAGTGTC CTTCCTTACC AGGAAAATGA AAGGATTCGC
ATACCGGCGG CAGACACCAA CGGCGACGGT GCAATCAATT CCAGTGACAT GGTATTGCTA
AAAAGATATG TCCTTCGCAG TATTAGCGAA TTTCCGGTTA AATATGATAT CTATGGAAAC
ATCATAAATT AA
|
|---|
| Protein sequence | MRKIAVLLIT LTFLVTTLFS MSFSSAAASH DYATALKYSI LFYDANKCGP DAAVDNVFSW
RGPCHTTDGS EIGLDLTGGY HDAGDHVKFG LPQAYAAAVL GWSLYEYKGV FDATGNTSKM
LSTLKYFTDY LLKCHPDSNT FYYQVGDGQA DHTYWGAPEV QPGPRPVPYV ANASNAASDV
CGLTSAALTI MYLNYKDIDQ NYANKCLKAA KELYTMAKTN LGYYAENAFY ISHSYWDDLS
FAATWLYVVE KDPTYLKEID SYLSNKTLWG ESPFNNKWTM CWDDMYMAVF CKLAEITGEQ
KYIDAMNYNL DYWMNSLNTT PGGLKYLDSW GVLRYAAAEA FIAMRYYELT KNEALKSFAK
SQIDYILGSN PINMSYVIGY GSNYPKCPHH RAANGYTYAN GDNAKPAKNL LLGALVGGPN
MSDNFIDDVN QFQFTEVAID YNAAFVGALA AIEKYYGNIV IPTPPATTPP SPTATPSLIW
CDVGDLNVDG SINSVDITYM KRYLLRSISV LPYQENERIR IPAADTNGDG AINSSDMVLL
KRYVLRSISE FPVKYDIYGN IIN
|
|---|
| |