| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_2287 |
|---|
| Symbol | |
|---|
| ID | 4026440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 2575837 |
|---|
| End bp | 2576868 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637967491 |
|---|
| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
|---|
| Protein accession | YP_574336 |
|---|
| Protein GI | 92114408 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCC ACGTCTCATC TCAGGCGATG CCGTTGCCGC GAATCGGCGC CTACGCATTG
TCCAGCCGAG CGATTCTCGC GCCCATGGCC GGCGTGACGG ATCGCCCGTT TCGTCAGTTG
TGCCGGGAGC TGGGCGCGGG GCTGGTGGTA TCCGAAATGG TGACGTCCGA CACGCGCCTG
TGGCATACCC GCAAATCGCG CCAGCGCCTC GACCACACCG GCGAGCCCGG CCCGCGTGCC
GTGCAGATCG CAGGCGGCGA TGCCGCGATG CTGGCCGAGG CCGCGCGCCT CAACGTTGCC
CAGGGCGCCG AGATCGTCGA CATCAACATG GGCTGCCCGG CCAAGAAGGT ATGCAACAAG
GCCGCCGGCT CGGCATTGTT GCGCGACGAA CGCCTGGTCG CGGAGATCCT CGAGGCGGTC
GTCGCCGCCG TGGATGTCCC GGTGACCCTG AAGATTCGAA CCGGCTGGTG TCCGCAAACC
CGCAATGGCG TACGGGTCGC CAAGCTTGCC GAGTCGGCGG GCATCCAGGC CCTTGCCGTG
CATGGGCGCA CGCGTGAGCA GCGCTATCGC GGCGAGGCCG AATACGACAC CATCGCCGCC
ATCAAGCAGG CGGTCTCGCT GCCGGTCTTC GCCAACGGCG ACATCGACGG CGCCGAGAAA
GCTGCCCGCG TCCTCGACTA CACTAAGGCG GATGCAGTGA TGATCGGCCG CGGCGCCCAG
GGCAATCCCT GGATCTTCCG CGAGATCGAT CACTACCTGC GTACCGGCGA CTGCCTGCCG
CGCCCGACGC CCGACGATAT CGCCACCCTG ATGCACCGTC ATCTCGAGGC ATTGCATGCC
TTCTACGGTG AGCACATGGG CGTGCGCATC GCGCGCAAGC ATGTCGGCTG GTATCTGGCG
ACGCAACCGC AAGCCGCGGC ACTACGCGCA CGCTTCAACG TACTGGAACA GCCCTCGGCC
CAACACCGTT TCGTGGATGC CTTGGCCCAC GACACGCTGG AACTGGCCTC AACTGGAAGC
AATGCAGCAT GA
|
|---|
| Protein sequence | MPTHVSSQAM PLPRIGAYAL SSRAILAPMA GVTDRPFRQL CRELGAGLVV SEMVTSDTRL
WHTRKSRQRL DHTGEPGPRA VQIAGGDAAM LAEAARLNVA QGAEIVDINM GCPAKKVCNK
AAGSALLRDE RLVAEILEAV VAAVDVPVTL KIRTGWCPQT RNGVRVAKLA ESAGIQALAV
HGRTREQRYR GEAEYDTIAA IKQAVSLPVF ANGDIDGAEK AARVLDYTKA DAVMIGRGAQ
GNPWIFREID HYLRTGDCLP RPTPDDIATL MHRHLEALHA FYGEHMGVRI ARKHVGWYLA
TQPQAAALRA RFNVLEQPSA QHRFVDALAH DTLELASTGS NAA
|
|---|
| |