| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1955 |
|---|
| Symbol | |
|---|
| ID | 4027195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 2211627 |
|---|
| End bp | 2213411 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637967151 |
|---|
| Product | flagellar M-ring protein FliF |
|---|
| Protein accession | YP_574006 |
|---|
| Protein GI | 92114078 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG CAGCATCCTC CTCGACCGAG GCCAATCAAG GTACGTCCGG ACAGCGTCAG
GGCAACGCCG CCGCACCGTC GCTCGTCGAC CGGTTGCGCG GCAACCCGCG TGTCCCGCTG
ATCATCGCCG CCGCGGCGAG CGTGGCGATC ATCGCCGCCC TGCTGATGTG GGCGCGCGCC
CCCGAATACC GCGTCCTCTA TTCCACGCTC ACCGACGCCG ATGGCGGCAA GATCGTCTCC
GAGCTCGACA GCATGGGCGT GCCCTACGAG TTCAGCGAGA ACGGGCAGGC GCTTCTGGTG
CCCGCCGATC AGGTGAACAA GCTGCGTCTC CAGCTCGCCG AGCAGGGCCT GCCGGAAGCC
TCCGGTGTCG GCTATGAACT GATGGACGAG CAATCCTTCG GCATCAGCCA GTTCACCGAA
CACGTCAACT ACCAGCGCGC CCTCGAGGGC GAGCTCGCGC GCACCATCGA GGACCTGGGC
CCCGTCTCCA AGGCCCGCGT CCATCTCGCC ATGGCCAAGC CCTCGGTCTT CGTGCGCGAA
AGCGAACCGG CCAGCGCCTC GGTGATGCTC GACCTGCAGC GCGGCCGTGT CCTCGGCGAA
GGCCAGGTAC AGGCCATCAT GCACATGGTC TCGAGCAGCG TCTCCGAGCT GGCCATCAGC
GACGTCGCCG TGGTCGACCA GACGGGACGT CTGCTGTCCC CCGCCAGCGA TGGTAACGAG
GCGCTCAATG GCTCGCAGCT CGACTACGTC GCCCGCGTCG AGCGCAACTA TGCAGAACGC
ATCGAGTCGA TCCTCGCCCC CATTCTCGGG GCGCGCAACG TCAAGGCCGA GGTGTCCGCG
CAACTGGATT TCTCCGAGCG CGAAGGCACC AGTGAAACGT ACGGCCCCAA TCAGCCGCCC
AACGAAGCCG CGGTACGCAG CGAGCAGACG AGCCTCAGCT ACAGCGGCGA CGGTGACCTC
GCCATGGGCA TCCCCGGCGC GCTGAGCAAC CAGCCACCGG GGACGGCCGC CTCGCCCATC
AACGCCCCCC AGGAGGACGA CGCGGGCGAC GGCGAAGGCG AAGACGCACA AGACGACGGC
AACCAGGACG AAGACGGCGA AGCCACGACC CAGGAAAACG CGACCCTGGG GCGGACCAGC
CGCGATAACA CCATCAATTA CGAGGTCGAC CGTACCGTCG AGCACATTCA GCACGAGACC
GGCACCATCG AGCGCCTCAA TGCCGCCATC GTGGTCAATT ACCGTGACGG CGTGGACGAG
GACGGCAACC CGACGCGGGT CCCGCTGAGC GACCAGGAAA TCGCCAATAT CCGCAGTCTC
GCCCAGCAGG CCATCGGCTT CTCGCAGGCG CGCGGCGACC AGCTCGAAGT CGTCAACTCT
CCCTTCGACG ACACGTCCGA GCAGCGCCCC GAGCCCGCAT GGTGGGAGTC TCCCCTGCTC
TGGTCGCTGG CGACCACGCT GGGGCAATAC CTGCTGATCG GTCTCGTCGC CCTGTTCCTG
TGGTTCAAGG TGCTGCGTCC GCTGATTCAA CGCCAGACCG AGCGCCCCGC CTTCACGCCG
GCCACGGCCG CGCCGGCGGG GGCCGCCGGG GGCGCCGAGG CCTACGCCGC CACCGCGGCC
GAGGGCACCG GTGCCGAGGA AGAACCGCCG GCACCGCCAC AGAAGCGCCG CGAGCGCCGC
TCGGCCAGTT ATGAACAAAA CCTCCGTGAC GTACGCGAGA TTGCCCAGGA AGACCCGCGT
CTCGTCGCCA TGATCGTCAG AGGCTGGATG AGTTCCCATG AGTAA
|
|---|
| Protein sequence | MSTAASSSTE ANQGTSGQRQ GNAAAPSLVD RLRGNPRVPL IIAAAASVAI IAALLMWARA
PEYRVLYSTL TDADGGKIVS ELDSMGVPYE FSENGQALLV PADQVNKLRL QLAEQGLPEA
SGVGYELMDE QSFGISQFTE HVNYQRALEG ELARTIEDLG PVSKARVHLA MAKPSVFVRE
SEPASASVML DLQRGRVLGE GQVQAIMHMV SSSVSELAIS DVAVVDQTGR LLSPASDGNE
ALNGSQLDYV ARVERNYAER IESILAPILG ARNVKAEVSA QLDFSEREGT SETYGPNQPP
NEAAVRSEQT SLSYSGDGDL AMGIPGALSN QPPGTAASPI NAPQEDDAGD GEGEDAQDDG
NQDEDGEATT QENATLGRTS RDNTINYEVD RTVEHIQHET GTIERLNAAI VVNYRDGVDE
DGNPTRVPLS DQEIANIRSL AQQAIGFSQA RGDQLEVVNS PFDDTSEQRP EPAWWESPLL
WSLATTLGQY LLIGLVALFL WFKVLRPLIQ RQTERPAFTP ATAAPAGAAG GAEAYAATAA
EGTGAEEEPP APPQKRRERR SASYEQNLRD VREIAQEDPR LVAMIVRGWM SSHE
|
|---|
| |