| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1072 |
|---|
| Symbol | |
|---|
| ID | 4028087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 1211618 |
|---|
| End bp | 1212556 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637966250 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_573128 |
|---|
| Protein GI | 92113200 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.283236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCCG GAAATGTCTA CGCACAAAGC ACGGCGACCA TCAAGGTCGC GAGTTACTTC
GCGGAAGATC ATCCTCAGAA CGTGGCCATC CGCGAAAAAT TCAAGCCGTA TGTCGAAAGC
CATTCCGACA TGCAGGTGAA GATCTACCCC AACAGCTCGC TCGGCGACGA GCGGCAATAC
ACCAATGGCG TCAGAACCGG CAGCATCGAA ATGGCGATTG CCGGTATGGG GCTGCAGACC
GCCAAGCCGC AAATCGGGTT TCCCGAGTGG CCGTTCCTGT TCGAAGACTA TGATCAAGCG
CAGTCGATGC TGAATGGTCC TGTCGGCGAG AAGATCGATC CCTATTTCCG CGAGCTGGGG
GTAGAACCCC TGGCTTGGAC GGCGAATGGG TTCCGGGTTT TCTCGAGCAA GGAAAAAATC
GACAGCATGG ACGACTTCGA CGGTTTCAAG CTGAGAATGC CCAACCTGGA ACTGTACGTG
GACGTGGGGC AAGCGTTAGG CGCCAACGTG CAGACCATGG GCATGTCCGA AGTCTACCCG
GCGCTCGAGC AGGGGGTGAT CGATGGACAG GATAATCCCC TCGCCACGCT GTATCGCTCG
GGATGGTACG AGGTGCAGAA CAACGTGCTG GAAAGCCGGC ACATGTTCAG CCCCAACGTG
TACCTGATGA ACCAGCAGTT TTACGACAAT CTGAGCGATG ACGAGAAAGA TGTCATCCAG
GAAGCCGCTC GCCAATCCAT GGAGATGGAG TGGCAACTGA TGCGCGAATC CGCCTCCGAG
ATCAAGCAAG AGCTCGAGAA GGCCGGCCTG GAAGTGACGG AACCGAGCCA AGAACTTCAC
GATGAAATGG TGAAAGCCGT TCAGCCGATC TATGACGACT TTTACAGTCA GTACGACTGG
GCTGAAGACA TGGTGAAGAT GGTACGTGAA GGTTCCTGA
|
|---|
| Protein sequence | MFAGNVYAQS TATIKVASYF AEDHPQNVAI REKFKPYVES HSDMQVKIYP NSSLGDERQY
TNGVRTGSIE MAIAGMGLQT AKPQIGFPEW PFLFEDYDQA QSMLNGPVGE KIDPYFRELG
VEPLAWTANG FRVFSSKEKI DSMDDFDGFK LRMPNLELYV DVGQALGANV QTMGMSEVYP
ALEQGVIDGQ DNPLATLYRS GWYEVQNNVL ESRHMFSPNV YLMNQQFYDN LSDDEKDVIQ
EAARQSMEME WQLMRESASE IKQELEKAGL EVTEPSQELH DEMVKAVQPI YDDFYSQYDW
AEDMVKMVRE GS
|
|---|
| |