Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Csal_0948 |
Symbol | |
ID | 4026802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chromohalobacter salexigens DSM 3043 |
Kingdom | Bacteria |
Replicon accession | NC_007963 |
Strand | + |
Start bp | 1063164 |
End bp | 1064405 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637966125 |
Product | secretion protein HlyD |
Protein accession | YP_573004 |
Protein GI | 92113076 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.297274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCCA CGACAGGGAA TGATCGCCGG GGCCTTCTGG CCGTGGCATT GGCGGGCGTT CTGTTGATGG GCTGCAGCAG CGACGACGAG GCCCAGCAGC AGGCAGGCGA TACTTCCCCG CCACCGAAAA AGGCGCAGGT CATGGAAATG ACCAAGCGCG ATATCGCGCT CGACAAGAGC TATCCCGCCA TGCTGCGCAG CGATAACGAG GTGACGGTCG TGGCACGCGT GAGCGGAACT CTCGAGGAGC GTCATTTCGA GCCCGGACAA CAGGTCGAGA AGGGCGAGAG TCTCTATACC ATCGAGCCGG AAATCTATCA GGCGACCGTG CGTCAGCGCG AGGCGGATCT GCAGAGCGCC CAGGCCGATG CGGAGCTGGC GCAGACCAAT GCCGACCGTT ATCAGCGGCT GCTCAAGCAG AACTCGGTCA GCGTGCAGCA GCGCGATCAG GCCCTGGCCG ACCTCAAGGT CGCGCGTGCC AGCGTGGCCC AGGCACAGGC GGCGCTCGAC AGTGCGCGCA TCGATCTGGA TTACACCGAT GTCGAGGCGC CCGTGTCGGG CATGATCAGC CTCAGCGAGG TCAATGTCGG CAATCTGGTG AACGATGGCA CCGAATTGGC GACCATCACG CCGCTCGATC CGTTGGAGGT CCGTTTCCAG CTCCCGCAGG AAGAAGCCTT CGAGTTGCGC CGTCAGCGCC AGCAGCAGGG CAAGGAGGCG GTGACCGCCG AGCTGGAAAT CCCAGCGTTG CCGGGGCAGA CCCTGGAAGG ACGCGTGGAA TTCCTGGGAT CGCGGGTCAG CGAGAGCACC AGCACGGTGC AGGCCAATGC CTTTTTCGAC AATCCCGGCG GGCTCTTCCT GCCCGGTCAG TTCGTGCGCG TCAAGCTGGA AGGCCTGAAG CGCTACGATG TGTTCGCCGT GCCGGAAATC GCCGTGACGC AAGGGCTGAT GGGCCCGCAG GTCTATGTGC TGAGCGATGA GGGCAAGGCG CGCACGCGTA CCGTGCAGCT CGGTGACACG GCCGGCCCAT GGATGATCAT CAAGGACGGG CTCGAGGCGG GAGACCGCGT CGTGGTCAGC GATCCGGGCA ACATCAGTGC CGGTGCGGCC ATCGATCCCC AGCCTTTCGA CGGCGATGCC GAGGCGCTTT CCGACACCGA TGGCGAGAGC CGGAAGGCGC CGCCGAATGC CGAGGCGTCG CCGGATGCGG CGAATCAGGG TCAGCAGGCA AGCGGAGCCT GA
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Protein sequence | MESTTGNDRR GLLAVALAGV LLMGCSSDDE AQQQAGDTSP PPKKAQVMEM TKRDIALDKS YPAMLRSDNE VTVVARVSGT LEERHFEPGQ QVEKGESLYT IEPEIYQATV RQREADLQSA QADAELAQTN ADRYQRLLKQ NSVSVQQRDQ ALADLKVARA SVAQAQAALD SARIDLDYTD VEAPVSGMIS LSEVNVGNLV NDGTELATIT PLDPLEVRFQ LPQEEAFELR RQRQQQGKEA VTAELEIPAL PGQTLEGRVE FLGSRVSEST STVQANAFFD NPGGLFLPGQ FVRVKLEGLK RYDVFAVPEI AVTQGLMGPQ VYVLSDEGKA RTRTVQLGDT AGPWMIIKDG LEAGDRVVVS DPGNISAGAA IDPQPFDGDA EALSDTDGES RKAPPNAEAS PDAANQGQQA SGA
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