| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0886 |
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| Symbol | |
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| ID | 4027792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chromohalobacter salexigens DSM 3043 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007963 |
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| Strand | + |
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| Start bp | 998120 |
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| End bp | 1000525 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637966063 |
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| Product | ribonuclease R |
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| Protein accession | YP_572942 |
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| Protein GI | 92113014 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.127406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCATT GGAAACTCAG TGACGATCCG CATGCGGAAC GTGAAGCGAG TAAATACGAT
AATCCCGTCC CCAGCCGCGA ATACCTGTTC GCGCGCCTGG AGGAGTACGG CAAGCCCATC
ACCCCCGAAA ACCTCAGCCG CATGCTGGCG GTGGACGACG AGGAACGGCT GGAAGGCGTA
CGCCGCCGGC TGGCCGCCAT GGAGCGCGAT GGCCAGATTC TGCGCAATCG GCGTGGTGCC
TACGCCCTGA TCGACAAGCT CGACCTCATC CGCGGCCGGG TTCAGGGGCA TCGCGACGGC
ATGGGCTTCT TGATCCGCGA GGATGGCAAG AAGCCCGATC TGGTATTGCC GCCTCGCCAG
ATGCGGCGTG TCTTCGACGG CGACCAGGTG CTGGTGCGCA TCAGCGGCCG CGACCGGCGC
GGTCGCGACG AGGCGACCAT CGCCGAGGTG CTGGCGCGCA ACACCCAGTC GCTGGTGGGG
GTCTACCGCC AGAATACCGC CGAGTTCGGG GTATTGATTC CCGAGAACTC GCGGATCTCC
CAGGAAGTGA TCGTGCCGCA TAGCGCCAGC GGTGGTGCCC GCGACGGCCA GATCGTCGCG
GTGCGCATCA CCCAGCAACC GGCGACGCGG GTACAGCCGG TCGGGGAGGT CACCGAAGTG
CTCGGCGAGC GCATGGATCC GGGGATGGAA ATCGACATCG CCATCCGCAG CTACGAGATT
CCCGCGGAAT TTCCGCCCGA GGTGCATGCC GAGATCGCCG ACATGTCGGC GTCCGTGGCC
GAGGCCGACA AGCAGAACCG GATCGATCTG CGCGATGTGC CGCTGGTGAC CATCGACGAC
GAGTCTGCCA AGGACTTCGA CGATGCCGTC TGCGCCTGGA AAACCAAGTC CGGGAGCTGG
AAGCTGGTAG TGGCGATCGC CGACGTCTCG CACTATGTGC GTCCGGGCAG CGCCCTGGAC
CAGGAGGCGA TCACGCGCGG CACCTCGGTC TATTTCCCCG GCCAGGTCGT ACCGATGCTG
CCCGAGCTGC TGTCCAACGG GCTGTGCTCG CTGAATCCCG AGGTGGACCG CCTGGCCCTG
GTCTGCGAGA TGAATATTTC GCCGAACGGG GCGATCAGCC GCTACCGCTT CTACGAGGCG
GTATTCCAGT CGCATGCGCG CCTGACCTAC AACAAGGTCG CCGCGATCCT CGACGACGAG
GGGCCGGAAG CCGACGCCCT GCGCGAACAG TACCGGAATC TCGTGCCCTC GCTGAAGAAC
CTGAAAAGTC TCTACACGAT CCTGCGCGAG GCACGCGAGG CGCGTGGTGC CATCGATTTC
GAGACCACCG AGACGGAAAT CATCTTCAAC GAGGCGCGCA AGATCGAGAA GATCGTGCCG
CGCTCGCGCA ACGATGCGCA CAAGATCATC GAGGAATGCA TGCTGGCCGC CAACGTGGCG
ACCGCGCGCT TTCTCGACAA GCACGATCTG CCGGCGCTGT ATCGTATCCA CGAGAAGCCT
TCGCCGGAGC GCCTGGACAA GCTGCGCCTG TTCCTCAACG AGCTGGGGCT GTCGCTGGGC
GGCGGCGACG ATCCTACGCC GCAGGACTAT CGCGACCTTG CCGAGGCGAT CAAGGGACGG
CCGGATGCCG ACGTCATCCA GACGGTAATG CTGCGCTCGA TGAGCCGCGC GGTCTATTCG
CCGCAGAACG ACGGCCACTT CGGTCTGGCC TATCCGGCTT ATGCGCATTT CACTTCGCCG
ATTCGCCGCT ATCCGGATCT GCTCGTGCAT CGCGCCATCC GCTCGGTGAT TCGAGGTCCG
CGCCAGACCA ATACCGTACT GCGTGCCGAG GGTGCGCCGG TGGAGCCGCC CAGCAAGTGG
GCGCCGTACA CCTTCGAGCA GATGCTCGAA CTCGGCGAGC ATTGCTCGAT GACCGAGCGG
CGCGCCGACG ACGCGACACG TGACGTCGAG GATTGGCTGA AGTGCGAGTT CATGTCCGAC
AAGCTCGGCG AGATCTTCGA CGGCACCATT GCCTCGGTGA CGCAGTTCGG CGTCTTCGTG
CGCCTCGACG ATGTCTATGT GGAAGGGCTG GTGCACGTCA CGTCGCTGCC GTCCGACTAC
TACCACTACG AGGCGGAAAA GCATCGCCTC AAGGGGGAGC GCAGCGGCAT GTCCTATCGC
CTCGGCGATG GCGTGACCGT GCAGGTGGCA CGCGTCGACC TGGACGAGCG CAAGATCGAC
TTCGAACTGG CCGACGACAA GCCACGCCCG CATCGCTCCA ACCGCGGCCG CAAGAAGCCG
GCGTCTGGCG GTGCGTCGAC ACAGGGCAAG CAGGGGGCCG GGCAGGACGG CAATGCCACC
AAGAAATCGC GCGACGGCAA GCCGCGCCGG CGTTCTCGGC GTGGCAAGGG AGACAAGCGC
GGATGA
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| Protein sequence | MNHWKLSDDP HAEREASKYD NPVPSREYLF ARLEEYGKPI TPENLSRMLA VDDEERLEGV
RRRLAAMERD GQILRNRRGA YALIDKLDLI RGRVQGHRDG MGFLIREDGK KPDLVLPPRQ
MRRVFDGDQV LVRISGRDRR GRDEATIAEV LARNTQSLVG VYRQNTAEFG VLIPENSRIS
QEVIVPHSAS GGARDGQIVA VRITQQPATR VQPVGEVTEV LGERMDPGME IDIAIRSYEI
PAEFPPEVHA EIADMSASVA EADKQNRIDL RDVPLVTIDD ESAKDFDDAV CAWKTKSGSW
KLVVAIADVS HYVRPGSALD QEAITRGTSV YFPGQVVPML PELLSNGLCS LNPEVDRLAL
VCEMNISPNG AISRYRFYEA VFQSHARLTY NKVAAILDDE GPEADALREQ YRNLVPSLKN
LKSLYTILRE AREARGAIDF ETTETEIIFN EARKIEKIVP RSRNDAHKII EECMLAANVA
TARFLDKHDL PALYRIHEKP SPERLDKLRL FLNELGLSLG GGDDPTPQDY RDLAEAIKGR
PDADVIQTVM LRSMSRAVYS PQNDGHFGLA YPAYAHFTSP IRRYPDLLVH RAIRSVIRGP
RQTNTVLRAE GAPVEPPSKW APYTFEQMLE LGEHCSMTER RADDATRDVE DWLKCEFMSD
KLGEIFDGTI ASVTQFGVFV RLDDVYVEGL VHVTSLPSDY YHYEAEKHRL KGERSGMSYR
LGDGVTVQVA RVDLDERKID FELADDKPRP HRSNRGRKKP ASGGASTQGK QGAGQDGNAT
KKSRDGKPRR RSRRGKGDKR G
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