| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0800 |
|---|
| Symbol | |
|---|
| ID | 4026173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 895749 |
|---|
| End bp | 898094 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637965966 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
|---|
| Protein accession | YP_572856 |
|---|
| Protein GI | 92112928 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2203] FOG: GAF domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCCGA AACAACATGA GCAGCGTCGA CTCCATGCAC TACGGGAAAC AGGACTTCTC
GATACACCGC CGGAAGAACG TTTCGATCGA GTAACACGTA TCGCCAAGCA ACATTACCAG
GTCGATACCA CGTTATTCAC ACTGATCGAT GCCAAACGAC AATGGTTCAA GTCGAAACAG
AACCTGGCCC TGGATGCCAC CCCCCGGCGA CATGCTTTTT GCGATTATAC GATCCAGCAA
AACAGTGTCT TCGTGGTGGA GGATGCCGCC AACGATCCCC TCTTTTTCAA GAACCCCCTC
GTCACCGATA CACCGCATAT TCGTTTCTAT GCCGGCGTTC CTGTACGCGA TCCGTCGGGC
TTCAAGATCG GAACGCTGTG CTTGATCGAC TCCACCCCGC GCGATGCGTC ACATATGGAT
TTCAGCATCC TGCGCAACCT CGCGGCAATG CTCGAAGAGT CACTGGAGAG CACCTACGCC
AGCGTTGCAA CGCCTTGCGA CGCCTATACC CAAAAAATGA CCCAAGCCAT TCAGCGCGTC
CAGAACATTT TCCTGAACGG CGATCGAAAG TCCTCTGCGT ACGAGACCCT GTTGTCGGAA
CTGCTGCGTT TGACGAGCAG CGAAATGGGG TTCGTCGGCG AGGTGCATGC GCCGGCGGAC
GACGCCCCCT ACCTGCGTCT CACCCGTTCG TTGAGCATGG CGCATCATCA GACATCACGT
CATCTTTCCT CCGAGACTGA CGAGGACTGT CTGCCACTCG ACGAGGACGA CGTGCTGATC
GGCGCCCCCT ATCGCTGCCG ACATATCACG ATTCGCGAGC TCACCCCCGC CATCTCGGAC
CATCCGGCCT TTCCCGAGGG CCATGACGCC ATCCGGACTT ATCTGGGGAT CCCGTTGCAA
ACCGAGGGCG CCGTGGTGGG ACTCATCGGA CTGGCCAACC GCCGTGGCGG GTACAGCCAG
GCGCTCGCCA CGCTCCTGTC GCCCTTCCTG CAGACCGTGG TGACGTTGAT CGAACGCGAG
CGCCTCGATG CCGCCAATCA GGAAAAGCAA CGCTTGCTGC ACGAGGCGAT CAATATCGAC
GGCCTCACGG GCTTGCCCAA TCGACGCCTG CTGAACGATC TTTTCCAGGA AGAACTCGCG
GCAGTCCGAC AGCGGCGCGG GTCGATTTCA GTGTGCTTTC TCGATCTGGA CGGCTTCAAG
AGCATCAATG ACAGCCAGGG GCATGCCGTC GGCGACAACG TCCTCAAGTG CGTCGCGGAT
CGCCTCAGGG GCGCCGTTCG GCATCACGAC GTGGTCGCCC GACTTGGCGG CGACGAATTC
GTCGCCATCC TTCGCGATGT CGAGCACCCC AGGGTCTACC GGCATATTCT CGACCAGTTG
CGACGCCCCA TGCACATTCA CGGTCATCCC CTCGAGTTGT CCGCCAGCAT GGGCATTACA
CGCTACCCGA ACGATGATTC GGATAGCGAT CTCTTGTTGC GGCACGCCGA TCAGGCCATG
TATACGGCCA AGGAATCGGG AAAGAACTGC TACCATTTCT TCGACCTGGA AAGTCATCAT
TCGCAGCAGG AGCGTTTTGC CATTGGCGCG CAAATACAGC GCGCGCTCGA CGACGACCAG
CTAGCCCTTT ATTACCAGCC AAAAATCGAT TACAAGACAG GCCGCGTCTC AGGCTTCGAA
GGCTTGATAC GATGGCATCA TCCATCGGGA GAGCTGATTT ACCCGGGGCG TTTCCTGCCC
TATATCGAAC ATACCAACAT CGATATCGAG GTCGGCAAGA GCGTGATCAG CCAGGCAGTC
TCGACACTGG AGGCCTTCCA GAAACGCGAC CTGCCTTACA CCGTCAGCAT CAATCTCAGT
CCGTCGCACT TCCTCAACGA CGAATTCCTG GATCACTTGA ACAATACCCT GAGTCGTTAC
GACATGGCGT TTCGCAAGCG CCTGACGCTG GAAATTCTCG AAAGTACGGC GCTCGATGAT
GCGGGGCTGG CCACCTCGAA CATCAAGGCG TGCCAGCAAC TGGGCGTGCA GCTGTCGCTC
GACGATTTCG GGACCGGTTA TGCCTCGCTG AGCTATTTGC GCAAGTTTTC CACCAACGAA
ATCAAGATCG ACCGTTCATT CATTCTCGGC ATGCTGAACG ATCCCGAGGA CCAGATGATC
GTTCAGGCCA TCATCGCGCT GGCCAAAAGC TTCGACCGCC GGGTAATCGC CGAGGGCGTC
GAACATCACG CCACCGAGAA AAAGCTCGTG GCCATGGGAT GCGACATGGG CCAGGGCTTC
CTTTACAGCC CGGCCCTGCC GCTGGCCGAC GCGCTGGACT GGGCGGCACA TTACGCCCGC
CCGTGA
|
|---|
| Protein sequence | MTPKQHEQRR LHALRETGLL DTPPEERFDR VTRIAKQHYQ VDTTLFTLID AKRQWFKSKQ
NLALDATPRR HAFCDYTIQQ NSVFVVEDAA NDPLFFKNPL VTDTPHIRFY AGVPVRDPSG
FKIGTLCLID STPRDASHMD FSILRNLAAM LEESLESTYA SVATPCDAYT QKMTQAIQRV
QNIFLNGDRK SSAYETLLSE LLRLTSSEMG FVGEVHAPAD DAPYLRLTRS LSMAHHQTSR
HLSSETDEDC LPLDEDDVLI GAPYRCRHIT IRELTPAISD HPAFPEGHDA IRTYLGIPLQ
TEGAVVGLIG LANRRGGYSQ ALATLLSPFL QTVVTLIERE RLDAANQEKQ RLLHEAINID
GLTGLPNRRL LNDLFQEELA AVRQRRGSIS VCFLDLDGFK SINDSQGHAV GDNVLKCVAD
RLRGAVRHHD VVARLGGDEF VAILRDVEHP RVYRHILDQL RRPMHIHGHP LELSASMGIT
RYPNDDSDSD LLLRHADQAM YTAKESGKNC YHFFDLESHH SQQERFAIGA QIQRALDDDQ
LALYYQPKID YKTGRVSGFE GLIRWHHPSG ELIYPGRFLP YIEHTNIDIE VGKSVISQAV
STLEAFQKRD LPYTVSINLS PSHFLNDEFL DHLNNTLSRY DMAFRKRLTL EILESTALDD
AGLATSNIKA CQQLGVQLSL DDFGTGYASL SYLRKFSTNE IKIDRSFILG MLNDPEDQMI
VQAIIALAKS FDRRVIAEGV EHHATEKKLV AMGCDMGQGF LYSPALPLAD ALDWAAHYAR
P
|
|---|
| |