| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7204 |
|---|
| Symbol | |
|---|
| ID | 8363398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8998622 |
|---|
| End bp | 9001777 |
|---|
| Gene Length | 3156 bp |
|---|
| Protein Length | 1051 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644969338 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_003126805 |
|---|
| Protein GI | 256426152 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.57085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGCA ATCTTTTAAT ATTCTCTCTT AAAAACAGAT GGGTAATCAT CCTGATGGGT
CTGGGCCTTA TGGGCATTGG TTACTGGTGT TTTACCCAAC TGAAAATAGA AGCCTATCCT
GACATTGCTG ATACCAACGT CATTATCGTG GCGCAATATC CTGGTCGTGC GGCAGAAGAA
GTGGAGCAGC AGGTCACCAT TCCCATAGAA AGGGCATTAC AGAATACGCC CAACGTACTC
GATCGCAGAA GCCGTACAAT CTTCGGCCTG AGCGTTGTAC AGCTGACCTT CACGGACGGA
ACAGACGACT ACTTCGCTCG CCAGCAGGTA AACGAACGAC TGGCCACAGC GGAATTACCG
GATGGCGTAG CCCCTGAACT GGCGCCGCTG ACGACAGCGG TCGGTGAGAT ATTACGTTAT
GTAGTAGAAG CGCCACCCGA ATATACACCG ACAGAAATAC GCGACCTGCA GGACTGGGTC
ATCAAACCTA ATCTGTTGCA GGTACCGGGT ATCGCGGATA TTACCACCTT CGGCGGACCA
CTCAAGCAGT TTCATATTCT CACAGCGCCA GATAAACTGC GCAAGTTTGA CCTGACCATG
CAGGACATGA TAGACGCTGT ACAGAAGAAT AACCAGAATA CGGGGGGGAA TATCATCAAC
CGCGGGGAAC AGGGATTTGC CGTACGTGGG TTGGGGGCTG TAAAAACAGA ACAGGACATC
CAGAATATCG TACTCAAAGC AGCGAACGGT ATGCCTGTCT ACCTGCGTGA CGTAGCTACT
GTAGAAGTAG CGCCGCCCCC ACCCAGCGGA GTGATGGGAT ATACTATCAA TGCCACTAAA
ACAAATGTGA GCAATGGCGT GGAAGGGATC ATTCTGCTGC GCAGATATGA GAATCCCAGC
GAGGTATTAA AAGCGCTGAA AGAAAAGATG CAGGACCTGG AACAGAACGA ATTGCCCAAA
GGTGTACACC TTCGTACTTT ATACGACCGT AGTTTCCTGA TCGATCATTC ACTGGAAACT
GTAGGTCATA CCCTGCTGGA AGGCGTCTCT ATCGTAGTGA TCATCCTGAT CTTCTTCCTG
GGTAGTCTGC GTAGCGCATT GGTAGTAGCG CTGACCATTC CATTCTCCTT ATTGTTTGCG
TTTATATTGA TGCGGCTCAC CGGGATACCG GCCAATCTGC TATCCCTCGG CGCCATTGAC
TTTGGTATTA TCGTGGATGG CGCCTGCGTC ATGGCAGAAC ATCTGATACG AACATACCGC
ACTGCCACAC CGGAAGAAAA GAAGAAAGGC ATTATCGCCC TCACCTTACG TTCTTCACAG
GAAGTGGGCC GTGAGATCTT CTTCTCTGTT ACCATCATCA TCCTGGCTTA TATGCCGATC
CTGCTGATGA CAAGGGTGGA AGGTAAACTC TTCTCCCCGA TGGCACTGAC ACTGGCATTC
GCAGTGATCG GCTCCATGCT GGCAGCACTG ACACTGATAC CGGTACTGAT CTCATTTGCC
TTTAAAAAAG CCTTCAGCAA TACAGAAAAG CCGATGAAAG TACATAGGAA TGTGGTACTG
GACTTTCTGT CCAATCAATA CTCCCGCGTA CTGACACGTG TCATGAAATG GCCTAAAGCG
ACCGTTTTAG GCGGTTTTAC AGTCGTGATA CTGTTGGTTA TGCTAGGTGG TAGTCTGGGC
TCTGAATTCC TGCCGGAACT GGATGAAGGC TCTATCTTCC TGCGTGGCAA CTTCCCGGCG
GGTATCACTA TACAGGAAAA TGCGAAGTAT TCTCCGAAGA TCAGGGAAGT GATCGCGAAG
TATCCACAGA TCTCTTTTGT GATCACACAG GCAGGACGTA ATGACGATGG TACAGATCCA
TTCCCTTCCA ACCGTAATGA AATACTGGTA GGACTGAAAG ACTATCAACT CTGGAGTGAT
ACCATTTCCA AAAAGACACT GGTGACCAAC ATCCGGCATG ACCTGGAAAA AGCAATGCCT
TCTGTGAAGT TCTCGTCCGG TCAACCTATC ATAGATCAGG TAATGGAGAT TGTAACCGGT
AGTGCGGCTG ATCTGGCAAT TTCCATTGTA GGCGATGATC TTACCATGAT GCGGGCAAAA
GCGGACACCA TTGCCAACCT CGTTAAAAAC ATGAAGGGTT CGGAATCAGT GAATATCGAA
CAGGAAGGAC CCTCAGAACA GATTGCCATT AACATCAACA GGGAAAACGC TGCCCGTTTT
GGGATCAATG TCGCAGATAT ACAGAGTATG ATCGAAGCAG CCATCGGCGG TAAAGCTATT
TCTACGCTTT ACGATGGTAC CAAACGTTAT GATGTGGTGA TCCGTTACCT GCCGGGAGAA
CGTAATACGA TAGAATCAGT CAAGACCTTA CAGGTACCTT CTGCAACGGG AGCACTGATC
CCGATGAATG AGCTGGCGGA TATTTCCTAT GTACAGGGGC AGACCAACAT CTACCGGTAC
AACAACAAAC GGATGGTCAC TGTACGTACC AACATCCGTG GTCGTGACCA GGGCGGTTTT
GTGAAAGAGA TCGGGGATAA GATCAATAGA CAATTATTTA TCCCTAAAGG TTATTCCATC
GTTTATGGCG GACAATACGA GAACCTGGAA CGTGCGGGTA AACAACTGTC GCTGACCATT
CCGATGACCA TCATCATGGT GTTCCTGGTA TTGTTTATCC TGTTCAGGAA CATGCCGCAG
ACCTTCGTTA CTGTCAGCTG TCTGTTCTTT GCCCTGGCAG GTGGTATTGT GGCGTTGTTC
ATCAGGGGAT ATCACTTCAA CGTATCGGCA GGTGTAGGTT TTGTAAGCAT ATTTGGTATT
TCTGTGATGG CGGGCGTATT GCTTGTATCA GCCTTTAACC GCTTGCGGAT AAAGCCGGAA
CAGACATTAC AGCAAAGTGT TTTACTGGGC GCCAGGGAGC AGCTGAGTGC ATTGCTGTCC
ATCCTGATTG TCGCTATTGC GGGTCTTATA CCTGCTGCCA CTTCCTCAGG TATTGGTTCA
GACGTACAGC GGCCACTGGC CACGGTGATC ATAGGCGGAT TGACAAGTAC ATTGCTTTTC
GCCCCTTTAT TGATACCTCC GTTGTATTGG TGGGTGGAGC GGAATAGGGC TGTAAAACAG
GTGGTAAAAG AAGATATTGA TGATCTGACA GAATAG
|
|---|
| Protein sequence | MIRNLLIFSL KNRWVIILMG LGLMGIGYWC FTQLKIEAYP DIADTNVIIV AQYPGRAAEE
VEQQVTIPIE RALQNTPNVL DRRSRTIFGL SVVQLTFTDG TDDYFARQQV NERLATAELP
DGVAPELAPL TTAVGEILRY VVEAPPEYTP TEIRDLQDWV IKPNLLQVPG IADITTFGGP
LKQFHILTAP DKLRKFDLTM QDMIDAVQKN NQNTGGNIIN RGEQGFAVRG LGAVKTEQDI
QNIVLKAANG MPVYLRDVAT VEVAPPPPSG VMGYTINATK TNVSNGVEGI ILLRRYENPS
EVLKALKEKM QDLEQNELPK GVHLRTLYDR SFLIDHSLET VGHTLLEGVS IVVIILIFFL
GSLRSALVVA LTIPFSLLFA FILMRLTGIP ANLLSLGAID FGIIVDGACV MAEHLIRTYR
TATPEEKKKG IIALTLRSSQ EVGREIFFSV TIIILAYMPI LLMTRVEGKL FSPMALTLAF
AVIGSMLAAL TLIPVLISFA FKKAFSNTEK PMKVHRNVVL DFLSNQYSRV LTRVMKWPKA
TVLGGFTVVI LLVMLGGSLG SEFLPELDEG SIFLRGNFPA GITIQENAKY SPKIREVIAK
YPQISFVITQ AGRNDDGTDP FPSNRNEILV GLKDYQLWSD TISKKTLVTN IRHDLEKAMP
SVKFSSGQPI IDQVMEIVTG SAADLAISIV GDDLTMMRAK ADTIANLVKN MKGSESVNIE
QEGPSEQIAI NINRENAARF GINVADIQSM IEAAIGGKAI STLYDGTKRY DVVIRYLPGE
RNTIESVKTL QVPSATGALI PMNELADISY VQGQTNIYRY NNKRMVTVRT NIRGRDQGGF
VKEIGDKINR QLFIPKGYSI VYGGQYENLE RAGKQLSLTI PMTIIMVFLV LFILFRNMPQ
TFVTVSCLFF ALAGGIVALF IRGYHFNVSA GVGFVSIFGI SVMAGVLLVS AFNRLRIKPE
QTLQQSVLLG AREQLSALLS ILIVAIAGLI PAATSSGIGS DVQRPLATVI IGGLTSTLLF
APLLIPPLYW WVERNRAVKQ VVKEDIDDLT E
|
|---|
| |