| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7099 |
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| Symbol | |
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| ID | 8363291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8877831 |
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| End bp | 8882273 |
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| Gene Length | 4443 bp |
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| Protein Length | 1480 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644969232 |
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| Product | YD repeat protein |
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| Protein accession | YP_003126701 |
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| Protein GI | 256426048 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00495038 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGT CAGCATATTT TTTTATAGCC AGTCTGACTG TGCTGTCCAT ATTGGGGAGT
AGCACAGTGT CTGCGCAAAA TAAACCGCAG GGGACACTTG GAACAGCTAC ACCAGTCATC
CAACCAGCTG CATATACTAA TCCGAAATTG AATTATGTCC GTACCTGGGA GCCATCTGCT
CCTTTAAAAG ATACCGTAGC GGTAGCATCC TCTACTAGAA TATTAAGAGA AGTCAAACAA
ACGACGCAAT ATTCAGATGG ACTTGGCCGG CCGGTGCAGA TTGTATCTAA GGCTAGCACT
CCAAATGGTC GGGATATGGT TTCAATGAAT GTGTTCGATC CCTACGGTCG AGAGGAATAT
ACTTATCTTC CCTATGTGCA TCAGGCATCA TCAGATGGTA AGTTTAAGGT TGATCCATTT
AGTGCACAAA GTACTTTCTA CCAGAATGCC ATATTTAATC CTGGTATGGT AGGGGAGAGT
ATATTTTATA GTAAAACGGA ATTTGAATCC TCTCCACTGA ACAGGACAAT TAAGAAGTAT
GCGCCCGGAA ATAGTTGGAG TACGCATCCA GTTGAAAATC TATATCAGGT AAACGATGCG
AAAGATTCTG TAAGGATCTG GACTATCGGA GGCGGGTTGC CTGTCAGTAC GGCGATTTAT
GGCGCAGGAC AATTGGCTAA GCATATAGTT ATTGATGAAA ATGCCAATCA GTCCATTGTA
TATACTGACA AGGACGATAA AGTTATATTG AAGAAAGTAC AAATCGGAAA TGCTCCAGCT
ACAGGATATT ATGGGTGGCT TTGTACGTAT AATGTCTACG ATGATCTGGG AAATCTTCGT
TATGTGATAC CACCTTTGGG TGTAGAAGCA ATCAAAAGCA ACTGGATATT AACAGCTGCA
GTCGATACTG GTTTATGTTT CCAGTATCAA TATGATACTC GTCAGCGCGT AATCATGAAA
AGAACTCCTG GATCGGGCCG TACACTTATG GTATACGATA AACGTGACCG GTTGGTATTT
ACGCAAGATT CGATACAACG CGCTAAATCT CCGGCTGAAT GGATGGTGAC TTTCTACGAT
GAATTGAATC GTCCGGTGAT GACAGGTCTT TATAGAAAGA CGATCTCTGC TGATTCTTTG
CAGAAAAGTA TGAATGCGGC ATCTGTTTCC CAATCCATAT CTTATATAGC TCCAGCCAAC
GCAGACCTTG CAGTATATGA ATATGATAGC AGCCCATTGT ATACGGCAAC CAATAGTGTG
TCTTTGCTGG ATGGGTTTGA CTCTGGTACC GGTGGTGAAT TTGTCGCTGA GATTAGTACT
GCGCTTGCGG GAGATACAAT AACTGTAGTG GCTAATAACC CTCTGCCTAA TATTCCTGCG
TCGGCACTGA CACCTTTGAC ATATAATTTT TATGATAATT ATAATTATAA AGATAAATTA
GCTTTTGTTG GTCCTGATAC AAATAAATTA CAGGCTGCGG ATACACTTTA TCCGGAAAGA
AGGCCAATAG CTGATAATGT GAACGGCCTG CTTACGGGAA CTAAGATAAG GGTGTTGGGT
ACAGAGAAAT GGCTGACCAC AACTACTTAT TACAATGATA AAGGCCGGAT AATACAGGTT
GTCAGTGAGA ATAATTTGGG AGGAAAAGAT GTTACATCCA GTTTGTATAG TTTTAAAGGA
TCTGTATTAG CTACTTATAT AAGACATCAG AACCCCAAAA GTCCCACCGC TCAGACGACC
GTATTAACGA CTTTGACATA TGATCCAATG GGCCGTCTAT TGACAATAAG AAAACGTTTG
AATGATGACG TAAGTCAGGA GAGAATAATT CTGTCAAATA GTTATGATGA AATTGGACAA
CTTAGGTTGA AACGGCTTGC TGTTACTTCA TCCGGAAGCA TGCTTGATTC TCTAAACTAT
ACATATAATA GTCGGGGATG GTTGCAAGGA ATCAACAAGA ACTTTCTCAA TAGTGGAAAT
GTTGCCTCCA ATTGGTTTGG GCTGGAACTG AGCTATGATT ATGGATTTAA GGTTAATCAA
TATAATGGAA ATATCGCTGG CGTCAAATGG AAAACCCGAT CAGATAGTGC GTGGACTTAT
GGTTATAGTT ATGATAAAAA TAATCAGTTG ATAGCAGCAG ATTTTTCTCA GAGAAATGGT
AATAGCTGGG TTCTGGGTAC TAAAGATTTT TCTGTTTCCA ATTTGAGTTA CGATGCGAAT
GGTAATATCA AAACAATGTT GCAGAAAGGT ATGATAGGTA CGACTAGCAG GACTATAGAT
AGTCTTGTTT ATGCGTATCC TTCCAATAGT AACAGACTAT TGTCTGTTAC GGACATTGAT
TCGTCTATTA CCCGACCAGC TAGATTGGGA GATTTCATAG ATGGTAATAC AACTACAAAA
GACTATTTTT ATGACGCTAA TGGAAACATG ATCGCAGATT TAAATAAACG GATCTCTTCT
ATTACATATA ATCATTTGAA TTTGCCAGTA TCAGTTACTA TTACAGGAAA AGGTACTATT
ACATATCAAT ATGATGCGGT CGGTAATAAA CTTTCTAAAA CAGTAGTTGA TAATACAGGC
AGTAGTACCA AAACAGTTGT AACTGACTAT GCTGGTATCT TTATTTACCA AAAGGATAGC
CTTGAACTGA TCAGTCATGA AGAAGGACGT ATTCGGCCGG TATACAAAAC GGCAGCTCCT
ATTGCGTATG TGTATGACTA TTTTGAAAAG GACCACTTGG GAAACGTAAG GACCGTATTA
ACAGATCAGA CTGATTTCAC GATGTATGCA GCAACAATGG AAACCGTTGC AGCTACTACA
GAAACAGCAT TGTTTGGCAA TATAGAGGAG ACACGGGCAG AAAAACCATC AGGCTACCCT
CAAGATGATG CGGCTGTTCA GAATAAATAT GTTGCAAAGC TTAATGCGAA AAACGGTGGA
CGGAAAATAG GCCCTTCTCT GGTATTAAGA GTAATGGCAG GAGATACTGT AAAGATTGGG
GCGAAAGCCT TTTATAAGTC TCAAGAGCCG CAAGACAATA ATCGAAATGT ACCGTTAGAG
GACATGTTAG CAAGTCTTGT ACAAGTATTT GGTAGCATCT CAGATGAGGG CTCCACACAC
CTCTCTTCAG TGGCCACGAA CGCTACTCCG TTTAACAGTG ATTTTTATAA TAATCATTAC
CAACGTCTAA AGGAAAAAGA GAATAATATC CAGTCTTTTT ATCGTCCTAA GTCTTATTTA
AACTTTGTAT TGTTTGATGA CGATTTTAAA ATGGTTGAGA AAAATAGTGG TGTAAGGCAG
GTAAAGGAAA ATCCTGATGA ACTACAGAAT ATAAGTGTAG ATAGAATGGC GATAGAAAAA
AGTGGCTTTT TATATGTATA TACAAGTAAT GAAAGTCAAC AAGATGTATT CTTTGATAAT
ATTGTTGTAG CGTTGAATAG TGGCCCATTA TTAGAAGAGA CGCATTACTA TCCATATGGA
ATGGTTATGG CCGGAATCAG TTCCAATGCC TTGAAAGGAG CTAATTATCA GGAGAATCGT
ATTAAATACA ATGGAAAAGA AATACACAAT AATGAGTTTT CGGATGGAAG TGGCCTGGAA
TGGGAGGACT ATGGTGCAAG AATGTACGAT GTACAATTAG GAAGATGGTT TGTCCCAGAT
CCTTTGGTAG ATAGATTCGC AAATGAGTCG CCATTTGTTT ACGGGGGCAA TAACCCTGTT
TTGAATATTG ATGTGGCAGG TGGATTTAAA TTTCCCAAAC CTAAAGCGGG GCAGAAAACA
CATGACTACG AGCGCACGTA TCCTAAATTT ACTCAGTATT TGAAAACAGG TATATCGAAT
TTGTTGAAGA GTCAGGAATT AGTAGATGCA TATGCAAAAT TTGGCTATCT TTCTCTGGCC
GATCTACAGA ATGATTTTAC CTGGGGAAAG GGTGCAACTA TAAAGATAGT TCCTTATCCT
GGAGGTACAT ATGAAGATGA GGCGAGTCGT TATGCAAGAG GATACACGCA TGATGATGAT
AGAGGAGAGA CAATTGAGAT CAGGGAAGAA TTAGTAGCTA TGTTTGAAAA AGCACCACCC
GAAGAGCAAG AGGCATTATT CTACTGGGTT ATCAGAACAC TGCTTCATGA GGAAGTACAT
CGGGGAAATT TGAAAAATGG AACTAATGGC GGAGAGCCAG GTATTGATTT TGATGATTGG
GTATGGGCTC CTATAAAGGA TGGGTACCGC GCGCCAGATC CTGTAACTCC GGGTTTTGGA
GATACTAATC CAAGGGAGAA AATGATAAAA TATGCCAATG ATGTGATAGC TGATAAGAAG
CAGACAGAAG AGGGTAAGAA AATGTTACCT AATATATTAG ATGCTCAAAC TGCAGAGACC
ATTAAAAGTT ATATGGACCG AAACCCTAAC ATAAAACTGG AGGTTAAAAC AACTTTACCA
TGA
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| Protein sequence | MKSSAYFFIA SLTVLSILGS STVSAQNKPQ GTLGTATPVI QPAAYTNPKL NYVRTWEPSA
PLKDTVAVAS STRILREVKQ TTQYSDGLGR PVQIVSKAST PNGRDMVSMN VFDPYGREEY
TYLPYVHQAS SDGKFKVDPF SAQSTFYQNA IFNPGMVGES IFYSKTEFES SPLNRTIKKY
APGNSWSTHP VENLYQVNDA KDSVRIWTIG GGLPVSTAIY GAGQLAKHIV IDENANQSIV
YTDKDDKVIL KKVQIGNAPA TGYYGWLCTY NVYDDLGNLR YVIPPLGVEA IKSNWILTAA
VDTGLCFQYQ YDTRQRVIMK RTPGSGRTLM VYDKRDRLVF TQDSIQRAKS PAEWMVTFYD
ELNRPVMTGL YRKTISADSL QKSMNAASVS QSISYIAPAN ADLAVYEYDS SPLYTATNSV
SLLDGFDSGT GGEFVAEIST ALAGDTITVV ANNPLPNIPA SALTPLTYNF YDNYNYKDKL
AFVGPDTNKL QAADTLYPER RPIADNVNGL LTGTKIRVLG TEKWLTTTTY YNDKGRIIQV
VSENNLGGKD VTSSLYSFKG SVLATYIRHQ NPKSPTAQTT VLTTLTYDPM GRLLTIRKRL
NDDVSQERII LSNSYDEIGQ LRLKRLAVTS SGSMLDSLNY TYNSRGWLQG INKNFLNSGN
VASNWFGLEL SYDYGFKVNQ YNGNIAGVKW KTRSDSAWTY GYSYDKNNQL IAADFSQRNG
NSWVLGTKDF SVSNLSYDAN GNIKTMLQKG MIGTTSRTID SLVYAYPSNS NRLLSVTDID
SSITRPARLG DFIDGNTTTK DYFYDANGNM IADLNKRISS ITYNHLNLPV SVTITGKGTI
TYQYDAVGNK LSKTVVDNTG SSTKTVVTDY AGIFIYQKDS LELISHEEGR IRPVYKTAAP
IAYVYDYFEK DHLGNVRTVL TDQTDFTMYA ATMETVAATT ETALFGNIEE TRAEKPSGYP
QDDAAVQNKY VAKLNAKNGG RKIGPSLVLR VMAGDTVKIG AKAFYKSQEP QDNNRNVPLE
DMLASLVQVF GSISDEGSTH LSSVATNATP FNSDFYNNHY QRLKEKENNI QSFYRPKSYL
NFVLFDDDFK MVEKNSGVRQ VKENPDELQN ISVDRMAIEK SGFLYVYTSN ESQQDVFFDN
IVVALNSGPL LEETHYYPYG MVMAGISSNA LKGANYQENR IKYNGKEIHN NEFSDGSGLE
WEDYGARMYD VQLGRWFVPD PLVDRFANES PFVYGGNNPV LNIDVAGGFK FPKPKAGQKT
HDYERTYPKF TQYLKTGISN LLKSQELVDA YAKFGYLSLA DLQNDFTWGK GATIKIVPYP
GGTYEDEASR YARGYTHDDD RGETIEIREE LVAMFEKAPP EEQEALFYWV IRTLLHEEVH
RGNLKNGTNG GEPGIDFDDW VWAPIKDGYR APDPVTPGFG DTNPREKMIK YANDVIADKK
QTEEGKKMLP NILDAQTAET IKSYMDRNPN IKLEVKTTLP
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