Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_7080 |
Symbol | |
ID | 8363272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8857735 |
End bp | 8858985 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644969213 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003126682 |
Protein GI | 256426029 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTAAAA AGAGAAAGTG GCTATTGGCT GCCATTGTTA TTCCTGTAAT TGCCATCTGT TATTTTCTAT TTGCCGGTAA AGCTGCGGAC AGCAGTATTA CAGCCAAAGT CCGGAAAGGT AGTTTTCGTG ATGTAGTCAG CAGTTCCGGT GAACTGCAGG CCGAAAATAC CGTGTATATC TCTGCGCCGG CCGATCTGCA GGCCAATCAG ATCTATGATG AGATCAAGAT ACAGGAGATG GTGCCGGAAG GCTCACATGT AAAAGAAGGC GATTACATCG CTACACTCGA TCCAACGTTG GTGAATAAAC GTATCAGTGA TATGCAACTA TCACTGGAAA AATCAAATTC AACCGTAACG CAGACAGCAT TGGATACGGC GCTGACGCTA AGGGAAGCCC GCGATCAGAT GACCAATCTG CAGTTCCAGA TGGAACAAAA GAAACTCGCA CTGGAACTCA GTAAATATGA GCCGCCCGCT ACTATCAAAC AGGCCGAAAT CGACCTGCAG AAAGCACAGC GTGATCTTGT ACAGATGAAA GACAATTACA AGATCAAACA GCAACAGGCG GCGACAAAGA TGGTGCAGGC TAAAAGAGAG GCAGATGAAT TCGGAAGGAT CATCGGCCGT CTGGAAGAAC TGCGCAGCCG CTTTGTCATT AAAGCGCCTA AAAATGGGTT ATTAGTATAT ATAAGCGACT GGGCAAGTGG TGGTAAAAAG AAAACAGGAT CTGTCGTACG TTCCTGGGAC CCCCGCGTAG CCATGCTGCC GGACCTTTCA TCTATGTTAT CCAAAGTCTA TATCAACGAA GTTGATATCA GCAAAATTCA CCAGTCACAA AAAGTGACGA TGGGACTCGA CGCCTTCCCT GAAGTAAAAA TGGAAGGCGT CGTTAAGACG GTGGCGAATA TCGGAGAGAC CCGTCCGGGC GCCACTGCAA AGGTGTTCGA AGTGAACATC AAGTTGAATA AAGTAGATTC TATTCTGAAA CCCGGAATGA CTACCTCCAA CAATATCCTG ATCAGTGAGG TACCTAAAAA ACTGATCATC CCACTGGAAG CCGTGTTTGC AGAAGGGAAG ACCAGTTTTG TATACCTGAG AAAATCAGGT AACATTTCCA AACAACAGGT GACACTGGGT AAATCAAACG ACGAAGAAGT AATTGTTGAA AAAGGACTGA CGGAAGGAGA TGTGGTATAT CTCTCCGAAC CCGAGTCAGC AAAGGAAACC AAAATCACGA CATTAAAATA A
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Protein sequence | MLKKRKWLLA AIVIPVIAIC YFLFAGKAAD SSITAKVRKG SFRDVVSSSG ELQAENTVYI SAPADLQANQ IYDEIKIQEM VPEGSHVKEG DYIATLDPTL VNKRISDMQL SLEKSNSTVT QTALDTALTL REARDQMTNL QFQMEQKKLA LELSKYEPPA TIKQAEIDLQ KAQRDLVQMK DNYKIKQQQA ATKMVQAKRE ADEFGRIIGR LEELRSRFVI KAPKNGLLVY ISDWASGGKK KTGSVVRSWD PRVAMLPDLS SMLSKVYINE VDISKIHQSQ KVTMGLDAFP EVKMEGVVKT VANIGETRPG ATAKVFEVNI KLNKVDSILK PGMTTSNNIL ISEVPKKLII PLEAVFAEGK TSFVYLRKSG NISKQQVTLG KSNDEEVIVE KGLTEGDVVY LSEPESAKET KITTLK
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