Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6976 |
Symbol | |
ID | 8363168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 8737009 |
End bp | 8738349 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644969109 |
Product | UDP-N-acetylmuramoylalanine/D-glutamate ligase |
Protein accession | YP_003126578 |
Protein GI | 256425925 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.282447 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0000349353 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAAAAGA AACTCATCAT ACTTGGAGCC GGTGAAAGCG GTATCGGTGC TGCCCTTCTG GGTAAGCAGC AGGGGTATGA TGTATTTGTA TCTGATGGCG GTGCTATAAA AGACATCTAT AAACAGGAAC TGGCAGTTAA CCACATCCCT TTTGAAGAGG GACGACATTC CTGGGATGTG ATATTGAATG CAGATGAGAT CATTAAGAGT CCCGGCATTC CTGAGAAAAG CGAATTGATG AAAAAGGTTC GCGCACAACA GGTACCTGTG ATCTCTGAGA TAGAATTCGC TTACCGGTAC AGCAAAGACA GTAAGGTCAT TGCCATCACC GGTAGCAACG GCAAAAGCAC AACAACGGCG CTCACTTTCA ACATCTTTGA AACAGCAGGT TTACATGCTG CAATGGTAGG AAATATCGGC CTCAGTTACG CGAGGCAGAT AGCGACAGCG CCGGCGGATT ATTACATTGT AGAAGTGAGT AGTTTTCAAC TGGACGATAT CAGGGATTTT AAACCAAACG TCGCTATTCT GTTGAACATA ACACCAGATC ACCTGGACCG TTATGACTAC AAAATGGCGA ATTATGTGGC GTCAAAATTC CGCATAGCGA TGAATCAGGG ACCGGAAGAT TATTTCGTGT ATTGTATAGA TGATCCTGAA ATCACGAATT ATCTGAAGGA ACATACTATT TATTCAACAA CAATACCGTT TACTATCATG GAACCATTAA AGCAAGGAGG ATTTATGGCA AACGAACAGG TGAACATCCA GGTTAATGAT GAGCCAATGA TCGTATCAAT GTATGATCTC GCATTAAAAG GCAAACATAA CCTGTACAAT TCCATGGCAG CCGGTATTGC TGGGCGAACG ATGGACATCA GAAAGGAAAA GATTCGCGAG AGTCTGACCT CCTTCAAGAG CCTCGAACAC CGGATGGAGT ATGTGGCGAC GGTACGCGGC GTGGATTTCA TCAATGATAG TAAAGCGACA AATGTTAACT CCCTCTGGTT TGCCCTGGAA AGTATGGAAC ACCCGGTAGT CCTGGTAATG GGTGGTGTGG ATAAAGGCAA TGACTACAGT GCGATACGCG ATCTGGTAAA AGAAAAAGTA AAAGCGATCA TCTGTCTGGG CGTTGACAAT GCACCGATAC AGGATGCATT ATCAGGCTAC ACACCGGTGA TGATAGATAC ACGCAGTATG AAGGATGCAG TGAATGCTGC CTTCCAGTAT GCGGCCAAAG GAGATGTGGT ACTGCTCTCT CCTGCCTGCG CAAGCTTCGA TCTCTTCAAG AATTATGAAG ACAGAGGCCG GCAGTTCAAG GAAGCAGTAA AAGAACTGTA A
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Protein sequence | MQKKLIILGA GESGIGAALL GKQQGYDVFV SDGGAIKDIY KQELAVNHIP FEEGRHSWDV ILNADEIIKS PGIPEKSELM KKVRAQQVPV ISEIEFAYRY SKDSKVIAIT GSNGKSTTTA LTFNIFETAG LHAAMVGNIG LSYARQIATA PADYYIVEVS SFQLDDIRDF KPNVAILLNI TPDHLDRYDY KMANYVASKF RIAMNQGPED YFVYCIDDPE ITNYLKEHTI YSTTIPFTIM EPLKQGGFMA NEQVNIQVND EPMIVSMYDL ALKGKHNLYN SMAAGIAGRT MDIRKEKIRE SLTSFKSLEH RMEYVATVRG VDFINDSKAT NVNSLWFALE SMEHPVVLVM GGVDKGNDYS AIRDLVKEKV KAIICLGVDN APIQDALSGY TPVMIDTRSM KDAVNAAFQY AAKGDVVLLS PACASFDLFK NYEDRGRQFK EAVKEL
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