Gene Cpin_6976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6976 
Symbol 
ID8363168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8737009 
End bp8738349 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content45% 
IMG OID644969109 
ProductUDP-N-acetylmuramoylalanine/D-glutamate ligase 
Protein accessionYP_003126578 
Protein GI256425925 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.282447 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0000349353 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAAGA AACTCATCAT ACTTGGAGCC GGTGAAAGCG GTATCGGTGC TGCCCTTCTG 
GGTAAGCAGC AGGGGTATGA TGTATTTGTA TCTGATGGCG GTGCTATAAA AGACATCTAT
AAACAGGAAC TGGCAGTTAA CCACATCCCT TTTGAAGAGG GACGACATTC CTGGGATGTG
ATATTGAATG CAGATGAGAT CATTAAGAGT CCCGGCATTC CTGAGAAAAG CGAATTGATG
AAAAAGGTTC GCGCACAACA GGTACCTGTG ATCTCTGAGA TAGAATTCGC TTACCGGTAC
AGCAAAGACA GTAAGGTCAT TGCCATCACC GGTAGCAACG GCAAAAGCAC AACAACGGCG
CTCACTTTCA ACATCTTTGA AACAGCAGGT TTACATGCTG CAATGGTAGG AAATATCGGC
CTCAGTTACG CGAGGCAGAT AGCGACAGCG CCGGCGGATT ATTACATTGT AGAAGTGAGT
AGTTTTCAAC TGGACGATAT CAGGGATTTT AAACCAAACG TCGCTATTCT GTTGAACATA
ACACCAGATC ACCTGGACCG TTATGACTAC AAAATGGCGA ATTATGTGGC GTCAAAATTC
CGCATAGCGA TGAATCAGGG ACCGGAAGAT TATTTCGTGT ATTGTATAGA TGATCCTGAA
ATCACGAATT ATCTGAAGGA ACATACTATT TATTCAACAA CAATACCGTT TACTATCATG
GAACCATTAA AGCAAGGAGG ATTTATGGCA AACGAACAGG TGAACATCCA GGTTAATGAT
GAGCCAATGA TCGTATCAAT GTATGATCTC GCATTAAAAG GCAAACATAA CCTGTACAAT
TCCATGGCAG CCGGTATTGC TGGGCGAACG ATGGACATCA GAAAGGAAAA GATTCGCGAG
AGTCTGACCT CCTTCAAGAG CCTCGAACAC CGGATGGAGT ATGTGGCGAC GGTACGCGGC
GTGGATTTCA TCAATGATAG TAAAGCGACA AATGTTAACT CCCTCTGGTT TGCCCTGGAA
AGTATGGAAC ACCCGGTAGT CCTGGTAATG GGTGGTGTGG ATAAAGGCAA TGACTACAGT
GCGATACGCG ATCTGGTAAA AGAAAAAGTA AAAGCGATCA TCTGTCTGGG CGTTGACAAT
GCACCGATAC AGGATGCATT ATCAGGCTAC ACACCGGTGA TGATAGATAC ACGCAGTATG
AAGGATGCAG TGAATGCTGC CTTCCAGTAT GCGGCCAAAG GAGATGTGGT ACTGCTCTCT
CCTGCCTGCG CAAGCTTCGA TCTCTTCAAG AATTATGAAG ACAGAGGCCG GCAGTTCAAG
GAAGCAGTAA AAGAACTGTA A
 
Protein sequence
MQKKLIILGA GESGIGAALL GKQQGYDVFV SDGGAIKDIY KQELAVNHIP FEEGRHSWDV 
ILNADEIIKS PGIPEKSELM KKVRAQQVPV ISEIEFAYRY SKDSKVIAIT GSNGKSTTTA
LTFNIFETAG LHAAMVGNIG LSYARQIATA PADYYIVEVS SFQLDDIRDF KPNVAILLNI
TPDHLDRYDY KMANYVASKF RIAMNQGPED YFVYCIDDPE ITNYLKEHTI YSTTIPFTIM
EPLKQGGFMA NEQVNIQVND EPMIVSMYDL ALKGKHNLYN SMAAGIAGRT MDIRKEKIRE
SLTSFKSLEH RMEYVATVRG VDFINDSKAT NVNSLWFALE SMEHPVVLVM GGVDKGNDYS
AIRDLVKEKV KAIICLGVDN APIQDALSGY TPVMIDTRSM KDAVNAAFQY AAKGDVVLLS
PACASFDLFK NYEDRGRQFK EAVKEL