| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6938 |
|---|
| Symbol | |
|---|
| ID | 8363130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8689839 |
|---|
| End bp | 8690678 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644969071 |
|---|
| Product | alpha/beta hydrolase fold protein |
|---|
| Protein accession | YP_003126540 |
|---|
| Protein GI | 256425887 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.178748 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTG AGCACATCGT ATTTCGTCGT TTGCAACTAA AAAAATTAAT TCTCGTGTCA
AATAAACCTT CAACCCAAAA TAACAATCTA AAGGAAAAGC CGGCTGTGCT GTTAATCCAT
GGTTTTTCTG AGAATAACCA GATTTGGCAA CATCAGCTGG ATACCTTGAG CGAACAGTTT
TATGTGATCG TACCCGATCT TCCGGGTACC GGCAATACGC CAGTCACCAC TCCGCTGAGT
ATGGAAAGTA TGGCCGATTA TGTATACGGT CTTTTGCAGT CAGAAGGTAT ATCCAGGGCA
ACAGTGATCG GACATTCCAT GGGGGGATAT GTAGCCCTTG CACTGGCAGA GAAGTATCCT
GCACTTATAC AGGGACTGGG TTTATTCCAT TCCACTGCCG CAGCAGATAC AGAAGAAAAA
AAAGAAGCCC GCCGGAAATC AATAAATATG ATTGAGAAGT ATGGCAATGA AGCTTTTGTA
AAACAGACAA TGCCTAATAT GTTCAGCCCT GCCTATAAAA AGCAGCATCC TGAACAAATT
GAGTCGTATA TTCAGATGTG TTTGCAGTGC CCGCAGTCGT CGCAGATCGC TTATTACGAA
GCAATGATGC AACGCCCGGA CCGCACCGCA ATCTTATCAT CTGTCACCGT GCCCGTGTTG
TTTGTAATCG GAAAAGATGA TACAGCAGTA CCCATGCAGC ATGTGCTGCC GCAGGTTTCC
ACACCACGCA TCAGCAGCAT TTACATCTTT GAAGAAACGG GACATATGGG CATGTGGGAA
ATGCCCGAAG CCAGTAAACA ACTGCTAGAA CAGTTTATTC TTTTTTGCCA ACACTATTGA
|
|---|
| Protein sequence | MAIEHIVFRR LQLKKLILVS NKPSTQNNNL KEKPAVLLIH GFSENNQIWQ HQLDTLSEQF
YVIVPDLPGT GNTPVTTPLS MESMADYVYG LLQSEGISRA TVIGHSMGGY VALALAEKYP
ALIQGLGLFH STAAADTEEK KEARRKSINM IEKYGNEAFV KQTMPNMFSP AYKKQHPEQI
ESYIQMCLQC PQSSQIAYYE AMMQRPDRTA ILSSVTVPVL FVIGKDDTAV PMQHVLPQVS
TPRISSIYIF EETGHMGMWE MPEASKQLLE QFILFCQHY
|
|---|
| |