| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6840 |
|---|
| Symbol | sucA |
|---|
| ID | 8363032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8567978 |
|---|
| End bp | 8570728 |
|---|
| Gene Length | 2751 bp |
|---|
| Protein Length | 916 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968973 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_003126442 |
|---|
| Protein GI | 256425789 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.631484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACT TCTCATTTGT TACCAACTCA CATCCTGCCT ACATTGAATC TTTATACCAG
GATTACCGTA AAGACCCTGG CGCAGTAGAC CCGGAGTGGA GCAAGTTTTT TGAAGGATTT
GACTTTGCGG TAAATAACGT TAATGGAAAA GCAGGAGCGC CGGGAGCGGC GGGCGCCGGT
TTACCGGTTA GCAGTGATCA GTTAACAAAG GAACTCAATG TTTACAGACT GATACAGGCC
TACCGTAAAA AGGGGCATCT GATCTCTAAG ACGAATCCTA TCCGTGAAAG GAAGGATAGG
CAAGCCAACC TGGATATTTC TTTTTACGGC CTTGGTGAGG CAGATCTGAA AACAGAATTC
TATGCCGGTC AGGTCCTGGG ATTGGGTAAG ACCTCCCTGG AAACTATCGT GAACCGTCTG
AAGCAGGTAT ACGCTGCGTC AGTAGGACTG GAATTCACAT ACATCAACGA CGCGAAGAAA
GTCGAGTGGT TACAGAAAGA AATGGAAACC ACTTTCCAGC AGCCGACTAC CCTGGAAAGC
AAAAAACGCA TCCTGCTCAA ATTGAACCAG GGTGTCATGT TCGAAAGATT CCTTCACACA
AAATATATCG GTCAGAAACG TTTTGGTCTG GAAGGTGGTG AAAACACCAT CCCTGCCCTG
GACGCTATCA TCAACACTGC TGCTGACGCC GGCGTACAGG AAGCAGTAAT TGGTATGGCG
CACCGTGGCC GTCTGAACGT ACTGGCTAAT ATTCTCGGTA AAACGTATGA GCAGATCTTC
AATGAGTTTG AAGGTCATGC CGTACCAGAC CTGACCATGG GTAGCGGCGA CGTGAAATAC
CACCTGGGTT TCCGTTCCAT CGTTACAACA CCATCTGGTA AAAAAGTCAA CCTGCAGCTC
CTGCCAAACC CTTCCCACCT GGAAGTGGTG GATCCGTTGG TAACAGGTTT TGCCCGCAGT
AAAGCGGACG TTATCTATGG CAGCGATTAC GATAAAATAC TGCCTATCCT GATCCACGGT
GATGCCGCGG TAGCAGGACA GGGTGTAATA TATGAGCTCC TTCAGATGAG CAACCTGAAA
GGTTACTACA CCGGTGGTAC CATGCACCTG GTGATCAATA ACCAGATCGG TTTCACGACT
GACTTTGACG ATGCCCGTTC TTCCGACTAT TGTACCAGTA TTGCTTCAAC CGTACAGGCG
CCGGTATTCC ATGTGAATGG CGACGATGCG GAAGCAGTGG TAAAAGTAGC TGAGATCTCT
GCCCGTTACA GACAGGAATT CAACTCTGAT ATCTTCATCG ACTTACTGTG CTACCGTAAA
CATGGCCATA ACGAAGGCGA CGAACCTAAG TTTACCCAGC CAAGCCTGTA TGCACTGATC
GATAAACATC CTAATCCGCG CGAAGTGTAC ACCCAGAAAC TGCTCCAGGC AGGTGAAGTG
GAAGTACAGG AACTGGCGAA GCAAATGGAA AAGAGCTTCT GGGCTGATCT CCAGGAGCGT
CTGGATGAAG TAAGACAGAA TCCGCTGCCT TACAACTATC AGAAACCGGA AGAATGGTGG
GCTGCATTGC GCAAGTCTCA GCCGGAAGAT TTTGAACAGT CTCCGGTAAC GGCCATCAAC
GAAGAAGAAG TAAAACGCCT GTTCGGTAAA CTGATGGAAT GGCCAAAAGA ATTTGTGCCA
TTACGTAAAG TGGAAAAACT GTTACAGGAT AAAATAAAAC TGTTCGAGAC TGAAGGTAAG
CTGGACTGGG CAACCGGTGA GCTGCTGGCG TATGCAAGTC TGCTGGCTGA AGGCAAAGAC
GTGCGTATGA GCGGTGAAGA CGTGAAGAGA GGTACTTTCT CTCACCGTCA CGCGATCCTG
TTTGACGAGA ACACCAACGC TACTTACAGC AGACTGGGTT CATTGCAGGA TAAACAAGGT
CAGTTCCGTA TTTACAACTC CCTGCTGAGT GAATTTGCGG TACTTGGTTT TGAATATGGT
TATGCAATGG CTAATCCGAA CACGCTGGTA CTGTGGGAAG CGCAATACGG CGACTTCGCC
AACGGCGCCC AGACAGTGAT CGACCAGTAT GTAAGCAGTG CAGAACAGAA ATGGACAACA
CAGAATGGTC TGGTCATGTT ACTGCCACAC GGTTACGAAG GTGGTGGACC TGACCACTCC
AATGCCCGTC CGGAAAGATT CCTGCAGGCA TGTGCCGAAT ACAATATGAT CGTCACGAAT
ATCACCACAT CGGCTAACTT CTTCCATGCG CTGCGTCGTC AGCTGACATG GCAGTTCCGT
AAACCGTTGG TTAACTTCGC ACCGAAAGCC AATTTAAGGC ATATCGGTTC TTATTCACCT
ATTTCAGCAT TCACTGAGGG TGGATTTAAA GAAGTACTGG ATGACGAATT TGTGGATGAT
CCGTCTAAAG TGAAGAAAGT ATTGCTGTGT ACAGGTAAGA TGTATTTCGA TCTGAGCGAA
AAACAGCAGA AGGAAAACAG AAAAGATGTT GCCATCGTAA GACTCGAGCA ACTGTATCCG
CTGCCGGTTA CACAACTGGA GGCGCTGAAC CAGAAGTACA AAGCTGCTAC ATGGTTCTGG
GTACAGGAAG AGCCGCTGAA CATGGGTGCT GCATCTTATC TGCAGATGAA CCTGAAACAG
ATCAACTATG GTGTGATCAG TCGTAATCCA AGTGCAGCTA CTGCAACAGG TTTTGCGAAA
GTTCACGCAA GAGAGCAGCT GGAGATCATC GAAACTGCAT TTAACATTTA G
|
|---|
| Protein sequence | MKDFSFVTNS HPAYIESLYQ DYRKDPGAVD PEWSKFFEGF DFAVNNVNGK AGAPGAAGAG
LPVSSDQLTK ELNVYRLIQA YRKKGHLISK TNPIRERKDR QANLDISFYG LGEADLKTEF
YAGQVLGLGK TSLETIVNRL KQVYAASVGL EFTYINDAKK VEWLQKEMET TFQQPTTLES
KKRILLKLNQ GVMFERFLHT KYIGQKRFGL EGGENTIPAL DAIINTAADA GVQEAVIGMA
HRGRLNVLAN ILGKTYEQIF NEFEGHAVPD LTMGSGDVKY HLGFRSIVTT PSGKKVNLQL
LPNPSHLEVV DPLVTGFARS KADVIYGSDY DKILPILIHG DAAVAGQGVI YELLQMSNLK
GYYTGGTMHL VINNQIGFTT DFDDARSSDY CTSIASTVQA PVFHVNGDDA EAVVKVAEIS
ARYRQEFNSD IFIDLLCYRK HGHNEGDEPK FTQPSLYALI DKHPNPREVY TQKLLQAGEV
EVQELAKQME KSFWADLQER LDEVRQNPLP YNYQKPEEWW AALRKSQPED FEQSPVTAIN
EEEVKRLFGK LMEWPKEFVP LRKVEKLLQD KIKLFETEGK LDWATGELLA YASLLAEGKD
VRMSGEDVKR GTFSHRHAIL FDENTNATYS RLGSLQDKQG QFRIYNSLLS EFAVLGFEYG
YAMANPNTLV LWEAQYGDFA NGAQTVIDQY VSSAEQKWTT QNGLVMLLPH GYEGGGPDHS
NARPERFLQA CAEYNMIVTN ITTSANFFHA LRRQLTWQFR KPLVNFAPKA NLRHIGSYSP
ISAFTEGGFK EVLDDEFVDD PSKVKKVLLC TGKMYFDLSE KQQKENRKDV AIVRLEQLYP
LPVTQLEALN QKYKAATWFW VQEEPLNMGA ASYLQMNLKQ INYGVISRNP SAATATGFAK
VHAREQLEII ETAFNI
|
|---|
| |