| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6793 |
|---|
| Symbol | |
|---|
| ID | 8362985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8507480 |
|---|
| End bp | 8508043 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644968926 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003126395 |
|---|
| Protein GI | 256425742 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0000626637 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCC AGTCTTTCGA TGATAACCAC TACCTGCAAT TATTCATCTC CGGCAGCGAA
GATGCATTTG ATGCTATCTT CAAACGTTAT TATGAAGGAT TATTGCAGTT TGCCAAGGTA
CTTCTGCCAT ATCCTACAGA CGAGGCAGAA GATATTGTAG CTGAAATGTT CTGTACCCTA
TGGCATAACC GTCGCCAGAT AGACATTTCC ACCACTTTAA GCGCTTATTT ATATGTCTCT
GTAAGAAACA GGGTGTTTGA CTATTACCGT AAGCGTAAGA CAATTTTTAA CCTCCCGGAA
GAAGCACTGG CCGATACGCC GGACGTTGGT TATCAACAGC CTGATCACCA GTTAATGTAT
AAGGATATTA CCTCACAGAT ACAGTCCCTT GTCGCACAAT TACCGCCCCA GATGCGACTT
GTATTTAAAA TGCACAGATA TGAAGGATTC AGTTATGACG AGATTGCAGG TCTGTTAAAT
ATATCTCTGA ATTCTGTTAA GACACATATG TTCCGCGCAC TCAAATTCCT CAAAGCAGCC
TATCCAATGT TACCAATATG TTAA
|
|---|
| Protein sequence | MARQSFDDNH YLQLFISGSE DAFDAIFKRY YEGLLQFAKV LLPYPTDEAE DIVAEMFCTL
WHNRRQIDIS TTLSAYLYVS VRNRVFDYYR KRKTIFNLPE EALADTPDVG YQQPDHQLMY
KDITSQIQSL VAQLPPQMRL VFKMHRYEGF SYDEIAGLLN ISLNSVKTHM FRALKFLKAA
YPMLPIC
|
|---|
| |