| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6752 |
|---|
| Symbol | |
|---|
| ID | 8362944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8460620 |
|---|
| End bp | 8462269 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644968885 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003126354 |
|---|
| Protein GI | 256425701 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATC TAAAACACCT GGTAATAACG GGTATCCTGT TATGTACTGT TCTTACATCC
TATTCCAGCA GCCGCTCCTA TTGCGATTCG CTTATCCAGC GGGGTATTGA CTCCATGATG
GCAAAGAAAT TCGTCTCCGC TATTACCCTG CTGACAGAAG CACAGCATCA GTCTGCCGAT
AATCACTTGC CCAGACAATT GTTCCTGGCT ACCAACAATA TCGGTCTCAC CTACTATTTC
ATGCTCGACT ACGGTGAAGC CCTGCGGAAC TACCTCGAAG CCTATAAAAT AGCCATGGAA
GAGAAAGATG CTACTCTGGA AATGACCGTC CTGAATAATA TCGCCATTCT CTACTCCAAG
GAAAAGAACT ATGATAAAGC CCGGGAGTAT TTCCTGAAAG CCTATACTAT CGCCAAAGAG
AAAAATGATA AGATAAGAAT AGGCAACTAC GCCCTGAACC TGGGCATTGT ACACACAGAG
ATCAGGCAAC TGGAAAAGGC AAGGGAATAC CTGCGCGAAT CAGCCAGCTA TCTGCAAAAC
GACCCCAGAA GACTGATCAG CGCGCGTTAT GCATATGCCC AGAACCAGTT CCAGGAAGAG
CATACTACCG AAGCTGATCT CCTGAGTCTT GAACTCCTTA AAGTCGCCCG CGATTCCGGC
TACAGAGATG AGCGCATCTC CCTGCTGACC CTGATCAGCT CCATCAAACT AAAACAGAAC
AATAGCACAC TGGCACTGCA GTACGCCAAC GAAGCGTTAT CCCTCTCCCC CAACCTGGAG
GAAAGAATAG AACTTTTCCA GACGCTGTCC GCGATCCATC TTAAAGACCA TGCTTATGCA
CAGGCCATGG CCAGCAAGGA TTCTGTGGTG TACTACCGGG ATTCTATCAA TACCGTTAAA
AACGGACAGC AATTCGAAAC CGGTAAACTG AAGTTCGAAC TGCTCAACTC ACAACACACC
CTTTCCCTCA ATAACGCACA ACTCTCCAAT CAGCGCCGCC TCTTGTACAT CGCCCTGGCA
TTCATCGCGA TTATCGTTAC CTTTTTCATC TGGCTGATGC GGATTAAAGC AGCTGAAAAC
AAACAAAAAG CCATCCTCGC CGAACGGAGC CATCAGATTA TGGCCCTGGA AATCGAAAAT
GAAAAAAGCC AGAAACTCCT GCTGGAAGAA CAGCTAAAAG AAAAAGAAAC AGCAGCCCTC
CTGGAACAGG AACGGCTGAA AAATGAGATC GAAATACGGA ACCGCAAACT CTCCGCAAAA
GCCCTCTACC TTTCCGGCAG AAATGAACTG ATAGACGATA TCATTACGGC CATGTCAAAA
ATTCCGGATT TAAATAAAGA CGGGGTAGTC GTAAAACACA TCTCTCAACT CAAAAGCTAC
CTCCGTACCG ATAGCGAATG GGACGATTTC AGCACCCATT TCCAGGAAGT CAACCAGGGA
TTCCTGAATG CACTCCGTGA AAATCATCCC AACCTGACCT CCAACGATGT CAGGTTCCTC
TCTTACATAT ACATGAATTT AAATACCAAG GAGATCGCCT CCCTGTTAAA CATCACACCG
GAAGGTTGCC GGAAACGAAA GGAACGCATC ACCAAAAAGA TGCAGCTGGC AGAAAACACC
TCCCTTTTTG AGTATTTATC AGGACTTTAA
|
|---|
| Protein sequence | MKYLKHLVIT GILLCTVLTS YSSSRSYCDS LIQRGIDSMM AKKFVSAITL LTEAQHQSAD
NHLPRQLFLA TNNIGLTYYF MLDYGEALRN YLEAYKIAME EKDATLEMTV LNNIAILYSK
EKNYDKAREY FLKAYTIAKE KNDKIRIGNY ALNLGIVHTE IRQLEKAREY LRESASYLQN
DPRRLISARY AYAQNQFQEE HTTEADLLSL ELLKVARDSG YRDERISLLT LISSIKLKQN
NSTLALQYAN EALSLSPNLE ERIELFQTLS AIHLKDHAYA QAMASKDSVV YYRDSINTVK
NGQQFETGKL KFELLNSQHT LSLNNAQLSN QRRLLYIALA FIAIIVTFFI WLMRIKAAEN
KQKAILAERS HQIMALEIEN EKSQKLLLEE QLKEKETAAL LEQERLKNEI EIRNRKLSAK
ALYLSGRNEL IDDIITAMSK IPDLNKDGVV VKHISQLKSY LRTDSEWDDF STHFQEVNQG
FLNALRENHP NLTSNDVRFL SYIYMNLNTK EIASLLNITP EGCRKRKERI TKKMQLAENT
SLFEYLSGL
|
|---|
| |