| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6732 |
|---|
| Symbol | |
|---|
| ID | 8362923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8432021 |
|---|
| End bp | 8433205 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644968864 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003126334 |
|---|
| Protein GI | 256425681 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000497834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.141975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAC CTGAGATAAA GCGATTGCTA GAAAAGTATA AACGTCGTGA GATTACCCCG
GAAGAACACC TGCAATTAAT GCAGGCCGTG CAGGATGACG CCTATACTGC CGCCATCAAA
GCTGATATAA TGGACACATT ATACGGCGAA ACGCCCGATA TGGGGTGGGA TGAGGGCCAG
GCTGCTGCAA TGCTGGAAGG TATTTTCAGC GATGGGATGG CGGAACGCCG GCATCTGCGG
GTGGTAAAAA GAAGAAGACT GGTATATCGC TCCTTAGCTG CGGCTGTGGT AGCGGGGCTG
ATCGCCACCG GGGTATATTA TATATCCCGG ACGGACAAAC AGGTAACTCC GGTAGTTGCC
GTAAAACAGA AGCCACTATT GCCCGGGTCT AACAAAGCCA TGCTGACCCT GGCCGATGGT
ACAGTTATAC CGCTGGACAG TGCAAAAAAC GGGGCTTTGG CGCAACAGGG GAATACGCAG
ATCACCAATA CCAACGGCAG ACTTAGTTAC AACGGAGGCG CCACAGGAGA AAAAGTGATG
TATAACACCG TCGTAACGCC ACATGGCGGA CAATACCAGC TGACACTTGC CGATGGTAGC
CGCGTATGGC TGAATGCCGC CAGCAGTATC AGGTTCCCGA CGGCCTTCAC GGGTAATGAC
CGGACAGTGG AAATTACCGG CGAAGCATAC TTCGAGATCA TGCAGCAGGC CGACAAGCCT
TTCCATGTGA AAGTGAATGA GGTACAGGTG AACGTTTTGG GCACCAGTTT CAATATAATG
GCCTATCAGG ACGAACAGGC CGTGAAAACA ACCCTGGTTG AAGGCGCCGT GCAATTAAAA
CACGGCAACG ATGCCAGCTT ACTGAAACCA GGCCTTCAGG CCAGCCTGTC AGCCAAAGAC
GATCATTTTG TGGTCTCTCC GGCTGATATG GAACAGACAC TTGCCTGGAA AGAAGGCAAG
TTCCGCTTCA GGAATACGAA TATCCGAACC ATTATGCGAC AGCTGTCGCG CTGGTATGAC
ATCCAGGTGA GCTACCAGGG AGATGTGTCT GATATCGACC TGACAGGGGT ACTATCCCGG
AGAGAGGAAG CCGGCAACTT ACTGACCGCG CTGGAAGCAA CTCAAAGGGT ACAATTTGAG
GTCAGCGGAA ACAATGTAAC CGTACGACCC TGGGGACAAC GGTAA
|
|---|
| Protein sequence | MTIPEIKRLL EKYKRREITP EEHLQLMQAV QDDAYTAAIK ADIMDTLYGE TPDMGWDEGQ
AAAMLEGIFS DGMAERRHLR VVKRRRLVYR SLAAAVVAGL IATGVYYISR TDKQVTPVVA
VKQKPLLPGS NKAMLTLADG TVIPLDSAKN GALAQQGNTQ ITNTNGRLSY NGGATGEKVM
YNTVVTPHGG QYQLTLADGS RVWLNAASSI RFPTAFTGND RTVEITGEAY FEIMQQADKP
FHVKVNEVQV NVLGTSFNIM AYQDEQAVKT TLVEGAVQLK HGNDASLLKP GLQASLSAKD
DHFVVSPADM EQTLAWKEGK FRFRNTNIRT IMRQLSRWYD IQVSYQGDVS DIDLTGVLSR
REEAGNLLTA LEATQRVQFE VSGNNVTVRP WGQR
|
|---|
| |