| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6680 |
|---|
| Symbol | |
|---|
| ID | 8362871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8375527 |
|---|
| End bp | 8376303 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644968814 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003126284 |
|---|
| Protein GI | 256425631 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3967] Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGG AAAACAGTAC TGTATTGATT ACAGGGGGAA CTAACGGGAT TGGTTTGGAG
TTTGCGAAAC AATTAATGCA ACATGGTGCA AACGTTATTG TTACCGGTCG CAATCCTGAC
AAACTGGATG AAACAAAAAG GCAATTTCCA GGTATAAATA CTATTCAAAG CGATGTGAAT
AATCCGGATA GTATTAAGGC GCTTTACAAG CAGGTTACAT CCCAATTTCC TGAGTTGAAT
ATCATCATTA ATAATGCGGG AATTATGCAT AGTGTGGAGG TAAACGATAA GGGTGTGGAC
ATATATAACG TTACGGAGGA GATTGAAACG AATTTTTCAG GAACCATCCG GATGATTCAT
CAGTTTCTCC CTCATTTGAT GAATAAAAAA TCTTCAGCGA TTGTAAATGT TACGTCAGGT
CTTGCATTTG TACCATTCAC TGTTTCACCA ATATATTGCG GCACGAAAGC GGGCATTCAT
ATATATTCAC AGGCATTGCG GCTTCAACTG AAAAACACAA GTGTGAAAGT ATTTGAGGTG
GCTCCTCCGA AAACAAACAA GCCTTTGCAA ACAGGTATAC CGGAAAAGAG TCATCCCAGG
GATATGAAAG TAGACAAAAT GGTGAGCCTT TCTATTCAGG GTATTTTAAA TGATAAGCTG
GAAATCAGAC CTGGATTAGC GAATGTTATG AAGTGGATGA GCCGGATAGC GCCTAACTTC
TTTACGGAAA TGATAGATAA AAGAATAAGT AAAGCAAAAG CTAGTCTCCA ACATTAA
|
|---|
| Protein sequence | MKLENSTVLI TGGTNGIGLE FAKQLMQHGA NVIVTGRNPD KLDETKRQFP GINTIQSDVN
NPDSIKALYK QVTSQFPELN IIINNAGIMH SVEVNDKGVD IYNVTEEIET NFSGTIRMIH
QFLPHLMNKK SSAIVNVTSG LAFVPFTVSP IYCGTKAGIH IYSQALRLQL KNTSVKVFEV
APPKTNKPLQ TGIPEKSHPR DMKVDKMVSL SIQGILNDKL EIRPGLANVM KWMSRIAPNF
FTEMIDKRIS KAKASLQH
|
|---|
| |