| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6661 |
|---|
| Symbol | |
|---|
| ID | 8362850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8356938 |
|---|
| End bp | 8357957 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644968794 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003126266 |
|---|
| Protein GI | 256425613 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAT CACCAGACCT ATACGCAAGA TTTATCAAAG GAGTATGTAC GGAAGAAGAA
CATCGTACCG TCATGGCGTA TTTGCGTGAA CATCCGGAGG AAATGGAAGA CCTGCTGATG
GAGTCAGACT GGGATCATTT CCGTCCTGAT GGTAAACTAC ATCCGGCCGT ATTGCAACGC
GTATTCGCCA ATATACAGCA GGATGTGGAT AAGTATGCGC GTAACAGGAT GATCTGGAAG
CGGATCGCAG CGGCAGCTGT ACTGACAGGT ATCATCGTAT TGACAGGCGC CTTATTTATC
CAACAGGATA AACGAGAAGC ATCGCTTGCC ATGGAAAGTT CGCCTGCTGT TACCTGGAAG
GAGTATACGA ATAACGGCAA ACAGCCGAAA CAGCTGCTCA TGGACGACAG TTCGCATGTC
GAACTGGGAG CAGGAAGTAC ACTACGCTGT AAAACAGGCT TCGAAAAAGA TAAACGCGAA
CTGTGGTTAA AAGGAAAGGC AAAGTTTGAT GTGGCAAAAG ACAAAGACAG ACCATTTACC
GTTTATGCCG GTAATACTGT TGTCACGGCA TTGGGTACTG TCTTTGGGGT CAATGAAAAG
GGTACTAAGG TGACTGTAAA ACTATATAGC GGAAAAGTGG TCGTACATCC GCAGACAGGC
ATCGCCAGCT TTAATAAGGT ATTTCTGCAG CCTGGAGAGT CTTTGGTGTA CGATATCAGC
AGTAAAAGAG AGCCGCTGGT GAATAAACCG GCTGTATTGG GACGAGAACC TGTCACCGGA
CAAGAAGTGG CTTCTAATAG CCTCGTATTC CATCAGCAGC CATTACCGCA GATCCTGCAA
CAGCTGGAAC AACATTTCAA TATAAAAATC ACCTGTGACG CAAAACGTCT GCAACATATC
AGGGTAACAG CGGAATTCAC AACATCCGAT ACACCAGCAG AAATATTGGA AAATATAGCA
TTATTGAATG ATCTGACTTT AGAGCGTACG GCTGAAGGAG GATTCCTCTT AAAGAAATAA
|
|---|
| Protein sequence | MALSPDLYAR FIKGVCTEEE HRTVMAYLRE HPEEMEDLLM ESDWDHFRPD GKLHPAVLQR
VFANIQQDVD KYARNRMIWK RIAAAAVLTG IIVLTGALFI QQDKREASLA MESSPAVTWK
EYTNNGKQPK QLLMDDSSHV ELGAGSTLRC KTGFEKDKRE LWLKGKAKFD VAKDKDRPFT
VYAGNTVVTA LGTVFGVNEK GTKVTVKLYS GKVVVHPQTG IASFNKVFLQ PGESLVYDIS
SKREPLVNKP AVLGREPVTG QEVASNSLVF HQQPLPQILQ QLEQHFNIKI TCDAKRLQHI
RVTAEFTTSD TPAEILENIA LLNDLTLERT AEGGFLLKK
|
|---|
| |