Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6621 |
Symbol | |
ID | 8362809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 8304352 |
End bp | 8305578 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644968753 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_003126226 |
Protein GI | 256425573 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0266362 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0342677 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACAT TTAACGTTCC TATTATATAT CGCAGTCCGC TGATCACGGC GATCAAAAAC CGCCGTAAGC AGCAGGACCG TATGAAAAAG GATTTTACGC CAACCGTACT GGATTTCGGT CCATTGAAAA TATTACTGGC CCGTCACTTT GGCTTCTGCT ATGGCGTGGA AAATGCCATC GAAATTGCCT TTAAGACAGT AGAAGCCAAT CCTGGCAAAA GGATCTTCCT GCTCAGTGAA ATGATCCACA ATCCACATGT TAATAACGAC CTGCTGGAAA AAGGGGTACA ATTCATCATG GACACAGCCG GCACACAACT GGTGCCATGG GAATCACTGA CGCCTGAAGA TATCGTGATT ATCCCGGCCT TCGGCACCAC CCTGGAAATC GAAGAGAAGC TGAGCTCCCT GGGCATTGCT CCTTTGCAAT ACAATACGAC CTGTCCTTTT GTGGAAAGAG TGTGGAACAA GGCAGAACAG ATCGGTAAGC AGTCTTACAG CGTGATCGTA CATGGTAAAC CTGGTCATGA GGAAACCCGT GCTACCTTCT CCCATAGCCG CAGCAATACG CCGACCGTCG TTGTAAAAGA TATAAAAGAA GCTCAGTTAT TAGCCACCTT TATCACCGGA GAGAAAAACC CGGAAGAATT TTATATCCTC TTCAAAGGAC AATACTCCCC GGGGTTTGAT GTCATCAATG ACCTGCAACG CGTAGGGGTG GTGAACCAGA CCACTATGCT GGCTACGGAA ACCCAGGCGA TCGCTGATTA TATCAAAAAT GTAATCATGG ACAGATATAG CCTCGATGCT TCCAATGTCA GTGAACGCTT TGCCGATACC CGCGATACCC TCTGTTATGC CACCAATGAC AACCAGAGCG CCGTTACCGG TCTGCTGGAA GAATCTGCCG ACCTGGCGAT TGTTGTGGGC GGTTATAACA GTTCCAATAC TTCTCACCTG GTAGAACTCT GCGAAGTGAA ACTGCCTACC TATTTCATCT CTTCTGAGGA GAAACTGGTC AATGCCGAAG AAGTACATCA CTGGGATTTC CATCACAAAC AGGAATTACA CAGCCGGGCT TTCCTGCCTG AAAAAGAGCA GGTAACCATT ATGCTGACGA GTGGCGCTTC CTGTCCGGAT GCGATGGTCG AAGCAGTGAT CAGAAGGCTC TTGTCTTTTT ATAAGCTGGA AGATAAAATG GAAGAAGTAG CAGCGACATT CGAATAA
|
Protein sequence | MKTFNVPIIY RSPLITAIKN RRKQQDRMKK DFTPTVLDFG PLKILLARHF GFCYGVENAI EIAFKTVEAN PGKRIFLLSE MIHNPHVNND LLEKGVQFIM DTAGTQLVPW ESLTPEDIVI IPAFGTTLEI EEKLSSLGIA PLQYNTTCPF VERVWNKAEQ IGKQSYSVIV HGKPGHEETR ATFSHSRSNT PTVVVKDIKE AQLLATFITG EKNPEEFYIL FKGQYSPGFD VINDLQRVGV VNQTTMLATE TQAIADYIKN VIMDRYSLDA SNVSERFADT RDTLCYATND NQSAVTGLLE ESADLAIVVG GYNSSNTSHL VELCEVKLPT YFISSEEKLV NAEEVHHWDF HHKQELHSRA FLPEKEQVTI MLTSGASCPD AMVEAVIRRL LSFYKLEDKM EEVAATFE
|
| |