| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6620 |
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| Symbol | |
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| ID | 8362808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 8303427 |
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| End bp | 8304305 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644968752 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_003126225 |
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| Protein GI | 256425572 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000794004 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00987109 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGGGA CCTCATTCAG CGCTGATATT CGCTACTGGC TTAGACAAGG AAACACAATT
AATCTTCTTC TTTTCTGGAA TGTAATTGTT TTCCTCGTCG TGGGAATTGT GTACCTGATC
GGCAAAATAG CTCCATCAAC CGGTTTCATT TCCCTTTTTA TTGCTGACAA TCTCTCTATA
CACTCCAATG TGTTCGCTTT TCTTAGAAAG CCCTGGGGAT TAGTCACTTA TATGTTTACG
CATTTCGAAT TCCTGCATAT TCTCTTTAAT ATGCTCAACC TTTACTGGTT TGGGAATATC
TTCAGATCAT TCCTGGGCAA CCAGCGTATA CTGCCACTTT ACCTGCTCGG CGGTATAGCG
GGTGGTCTTG CCTATCTCCT GGTCTATAAC CTGGTATTTG GCGGCGCCAA CGTTCCCATG
ATCGGCGCTT CGGCATCTGT AATGGCCATC CTGATCGCCT GTGCTACCAA ACTGCCCAAT
TATGAGATCG GCCTGCTCCT GATCGGTACC ATCCGGTTGA AATGGCTGGC CATCATCGTG
ATCGTGCTGG ACCTGGTATC CCTGACCCAG GGAAACATCG GTGGCATAAC CGCTCATATG
GGTGGCGCTC TCTTCGGCTT TATCTATATA CAGCTTCTCA ATAACGGCAC AGACCTGGGA
CAACCTTTGA TCTGGCTTTT TAACAGACCT GCACGTAGCG CAAACGCCCG ACGCCGATCT
TTCAAACCGA AAAAATCTCC GCTCAAGGTG GTAAAACCAG GTATGGAAGA AAATAAACAA
CTCCGGCTGG ATCAGCTCCT CGACAAGATT AACGACAACG GCATCGAAAG CCTCAGTCCT
GAAGAAAGAG CCTGGTTAAA GAAAATGAGC CAGGAATAG
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| Protein sequence | MNGTSFSADI RYWLRQGNTI NLLLFWNVIV FLVVGIVYLI GKIAPSTGFI SLFIADNLSI
HSNVFAFLRK PWGLVTYMFT HFEFLHILFN MLNLYWFGNI FRSFLGNQRI LPLYLLGGIA
GGLAYLLVYN LVFGGANVPM IGASASVMAI LIACATKLPN YEIGLLLIGT IRLKWLAIIV
IVLDLVSLTQ GNIGGITAHM GGALFGFIYI QLLNNGTDLG QPLIWLFNRP ARSANARRRS
FKPKKSPLKV VKPGMEENKQ LRLDQLLDKI NDNGIESLSP EERAWLKKMS QE
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