Gene Cpin_6516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6516 
Symbol 
ID8362700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8177463 
End bp8178275 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content44% 
IMG OID644968644 
ProductNIPSNAP family containing protein 
Protein accessionYP_003126121 
Protein GI256425468 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.732065 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0663973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAACAA CACATATATC GTTGAATGCC TTTCATGCCA TGGCTTTCGG TCTGCTGCTT 
TTATTGCTGC CCTCTTTATC ACAGGCTACG TGTACTGCAC CTCCGAAAAA AGAATATTAC
AGCATACTTA TCTATCATCT GAAAGATGCC GCACAGGAAG CACGTATGGA CGCTTATCTG
AAGGATGCAC TGCTGCCTGC TTTACACAAG GCAGGAGCCG CACATGTAGG CGTATTTAAG
CCTGTAGGAA ACGATACGGC GGCTGATCGC AGGATCTATG TATTTTTCCC GGGCAATTCG
ACAGAAACCC TGTTACATAT GCCGGCTACC CTATTACAGA ACAGTGCTTA TCTGGCTGCA
GGAAAAGACT TCATTGACGC AGCATGGGAT CAGCCTACAT TCGTACGCCA GGAAACGATT
ATCCTGCAGG CATTTCCAGG AATGCCGAAA ATGGCTTTAC CTGCATTGAC GGGCGCCAAA
AGTGAACGTA TATACGAATT ACGCAGTTAT GAGAGTCCGT CGGATAAATT ATACCGTAAT
AAGGTAGATA TGTTTAACAA AGGTGACGAA GTAGGGATCT TCAAAAGACT GGGTTTTAAT
GCGGTATTCT ATGCAGATGT ATTAAGTGGC AGTCGTATGC CTAATCTTAT GTACCTGACT
ACTTTTGATA ACAAGGCATC AAGAGATGAA CACTGGAAAG CTTTCAGTAG CGATGCACAA
TGGAAAACAT TGCTGGCAAA ACCGGAGTAT GCACATAATG TGAGCAGGTC AGAGATTATT
TTTCTGTACC CTGTGGAATA CTCTGATATC TGA
 
Protein sequence
MKTTHISLNA FHAMAFGLLL LLLPSLSQAT CTAPPKKEYY SILIYHLKDA AQEARMDAYL 
KDALLPALHK AGAAHVGVFK PVGNDTAADR RIYVFFPGNS TETLLHMPAT LLQNSAYLAA
GKDFIDAAWD QPTFVRQETI ILQAFPGMPK MALPALTGAK SERIYELRSY ESPSDKLYRN
KVDMFNKGDE VGIFKRLGFN AVFYADVLSG SRMPNLMYLT TFDNKASRDE HWKAFSSDAQ
WKTLLAKPEY AHNVSRSEII FLYPVEYSDI