Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6466 |
Symbol | |
ID | 8362650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8123618 |
End bp | 8127061 |
Gene Length | 3444 bp |
Protein Length | 1147 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968594 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003126071 |
Protein GI | 256425418 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000431216 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATTT TGAACCAAAA TCTCGTTTTG GGGCTGCTCT CTTGTGCCCT GCTGCCAGGT ATTGCCATAT CTGTCAGCGC ACAGACGCCC TCGATGTATG CCATGAGGCA GTCTGATAAG ATCCCTGTAA AACACGTATC TGCCACTGTG TCCCTTAAAG AAGCTTTAAT AAAGCTAAAG AAATTTCAAA ATGTCCGTAT CGCTTATAAA GAGGGATTAC TGGATGGGAA ACTGATATCA GCAGAACTAA TGGAAAAAGC GGAAAGCATG GAGACAGAAG CAGCATTACG CCTGCTCTTG TCTGACTTTG CGCTTGCTTA TATGCGTGTC AATAAAACAC AATATTCTAT ATATACACCT TCAGCATCCA CTATCCTCAA CGTGAACAGT CTGATGGCTG ATAAACTGAA AGGTAAAGTA ACCGGTCCTG ATGGTTCGCC TGTACCTGGT GCAAGCATTG TACTCAAAGG TAATTCCAAT GTGGCAGCTA TGGCCGGTCC TGATGGTAGC TTCGAACTGA ACCTCAAAGG CGCTACACCG CCTTTTGTAC TGGTGATCAG CTCCATGGGT TTTGCTAAGA AAGAAGTAAA TGTAACCGAT GCTGATGCGC CACTGGCTAT CAGTCTGGCA GAATCGAATG AATCATTATC TGAAGTAGTA GTGACGGCAT TGGGTATCAG AAAGGAAAAG AAAGCCCTGG TATACGCAGT ATCTGAAGTA AAAGGTAGTG AATTCACACA GGCACGTGAA GTGAACGTTG CAAATGCATT GAGCGGAAAG ATTCCTGGTG TGAATGCAAC CAGTCTGGCG AGCGGTCCTG GTGGTTCCAG CCGTGTCATC ATCCGTGGTA ACAGCTCATT GGGTAGTAAT AACCAGCCAC TGTATGTAGT GAATGGTATG CCGATCGATA ATACGACACC GGGTGGTGCG CCGACTACAG GTGGTGGCGG ACAAAACGTA GACAGAGGCG ATGGTATCGG TGGTATCAAC CCGGATGATA TCGAAACTAT CAGTGTACTG AAAGGTGGAT CTGCTGCGGC GCTGTATGGC TCCCGTGCTG CAAATGGTGT GATTGTGATT ACCACTAAAA AAGGTCGTGC ACGTAAAGGT ATCGGTGTTG ATTACAATAC AACCATGACA TTGGAATCGC CTGCTGTATT GCCTGACTGG CAGTATGAAT ATGGTCAGGG TGACAAAGGT CTGAAGCCGA CTTCACAGGC AGAGGCGATC ACCTACGGCC GCCGTTCATG GGGTACTAAA ATGGATGGTA CAGAATATGT AGCTTTCGAT GGGAAAATGC ATTCATATAC TCCACAGAAA GATAATATCA AAAACTTCTA CCGTACCGGA TCTACTTTTA CCAATACAGT AGCCTTCAAC GGTGGTAGCG AAGCAGTAAA TTTCCGCTTC TCCCTCTCAA ATACCAACAG TAAAGCTATC ATTCCAAATT CAAAGTTCGA CAAGAAGATT GCGAACCTGA ACCTGAATGC TTTCCTGGGT AAAAAACTGA GCATAGAAGC TATAGCGCAA TATAATGTTG AGAATGCAAC CAACCGTCCC AGTTCCGGGG ATGCCACCGG TAACCCCAAC TGGGGCGTTT ATATGGTAGC CAACACAGTT GACGTACGCT GGATGGATCC GGGTTATGAT GAAACCGGTC GTGAGATCCA GTGGAATGAA ACAGCCTACG CTTCCAACCC TTATTTTGTT GTCAACAGAT TTAAAAACAA CGATACCAAA AACCGTTTCA TCGGTCAGGC CAGCGTTAAA TATGATCTGC TGAAAAATCT CTACGTAAAA GGAACAGTGA GCCGTGACTT TTTTGATTAC AACTACATCG GTATCATCCC AACCGGTACT GTGTACACAA CCGGCGCAGC AGGTGAATAC AGTGAACTGA GAAACTCTGT AGCTGAAACT AACTCTATGG TAACTGCCGG TTACAACACC AAGATCGCAG GTAACATCGG CGTGAATGCT TTGGTAGGTG CTAATGCCCG TCGTTTTAAT ACCAACCAGA CGGCTATTGC AGGTACACAG TTTATCATTC CGTTCTTCTA CAGCTCTACT AACCTGACCA CCTCTACAAC TACGCCAACA AGAGGTAAAG TAGCGACCAA CTCAGTATTT GGTTCCCTGG ACCTGGATTA CAAATCCATC TTCTTCCTGA ACTTTACAGC GCGTCAGGAC TGGTTCTCCA CACTGAGTCC ACAGAGCAAC AGCATTCTAT ATCCTTCAGT AGGTGGTAGC TTTATCCTCT CTGATGCGGT GAAGATGCCA AAGGCAATCA GCTTTGCAAA ACTGCGTGCT TCATGGGCAC AGGTAGGTGG TGCAACGCCG GATCCATATA TCCTGAATCA GACATATACG ATGTTACAGG GAGGTCACCT GGGTCGTCCG GTACAGCAGG TAACGCAGTC TAATGCAGTG AACCTGGTAA CCAACTCTAC CCTGAAACCA TTGACCTCTA CTACATATGA AGTTGGTGGT GAAGCGCAGT TCCTGAATAA CAGATTGGGC ATTGACCTGA CGTACTACAA GAAACAGACG ACAGACGATA TCGTAAGCAC TGCGATCTCT ACCGCCTCCG GTTATAACAA TGCGTTACTG AACGTAGGTA AACTCTCCAA CAAAGGCGTT GAATTACTCC TGACAGGTAC GCCAATCAAA CGTAAAGACT TTTCCTGGAA TGTGAGCTAC AACATGGCCT ACAATGTCAG TAAAGTAGAA CAGCTGGCTG CAGGTCTGAA TACCCTGCAA ATGGCGACAA GCGTAGGTAG CTGGGCATTT GTACACAACA CAGTAGGACA GCCTTATGGT ATCATCATGG GTTACACTAC TGTACAGAAT GAAAAAGGAC AGACCGTTTA CAACAGTACC TCCGGCTATG AGCAGAAAAG TGAACTGAAA GCATTAGGCA GAGGTGTACC GCCGCTGACA ATGGGTCTGA GCAACACGTT TAACTACAAA CGCCTGTCCC TCGACATCCT GGTAGACGGC AAGTTTGGCA ACAAAGTATT CTCCGGTACG GATGTATATG CGACCCGTTT TGGTCTGCAC AAGAAAACAC TCGTAGGCAG AGAAAATGGT ATTGAACTGA ATGGTGTGGA TGAAAAAGGA AATGACTATC ATAACACGAT TCCGGTAGCC AATCTGCGTC TTTACTACGA TAACACGAAG AACTACACGG ATCATTTCCT GTATGACGGC AGCTTTGTGA AATTACGCCA GGTGGTATTC AGCTACCAGA TTCCGGTAGC GAAACTCAAA ATCGTACAGA GTGCTTCCTT GTCTTTCGTA GCACGTAACC TGCTGATCCT TTACAAGAAG ACCGACAACT TCGATCCGGA ATCCAGCTAC ACAAACGGCA ATGCACAAGG TTTCGAAGCA TTTGGTATGC CTCGTACAAG AAGCTTTGGT GCTAACCTGA TGGTGAAATT CTAA
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Protein sequence | MNILNQNLVL GLLSCALLPG IAISVSAQTP SMYAMRQSDK IPVKHVSATV SLKEALIKLK KFQNVRIAYK EGLLDGKLIS AELMEKAESM ETEAALRLLL SDFALAYMRV NKTQYSIYTP SASTILNVNS LMADKLKGKV TGPDGSPVPG ASIVLKGNSN VAAMAGPDGS FELNLKGATP PFVLVISSMG FAKKEVNVTD ADAPLAISLA ESNESLSEVV VTALGIRKEK KALVYAVSEV KGSEFTQARE VNVANALSGK IPGVNATSLA SGPGGSSRVI IRGNSSLGSN NQPLYVVNGM PIDNTTPGGA PTTGGGGQNV DRGDGIGGIN PDDIETISVL KGGSAAALYG SRAANGVIVI TTKKGRARKG IGVDYNTTMT LESPAVLPDW QYEYGQGDKG LKPTSQAEAI TYGRRSWGTK MDGTEYVAFD GKMHSYTPQK DNIKNFYRTG STFTNTVAFN GGSEAVNFRF SLSNTNSKAI IPNSKFDKKI ANLNLNAFLG KKLSIEAIAQ YNVENATNRP SSGDATGNPN WGVYMVANTV DVRWMDPGYD ETGREIQWNE TAYASNPYFV VNRFKNNDTK NRFIGQASVK YDLLKNLYVK GTVSRDFFDY NYIGIIPTGT VYTTGAAGEY SELRNSVAET NSMVTAGYNT KIAGNIGVNA LVGANARRFN TNQTAIAGTQ FIIPFFYSST NLTTSTTTPT RGKVATNSVF GSLDLDYKSI FFLNFTARQD WFSTLSPQSN SILYPSVGGS FILSDAVKMP KAISFAKLRA SWAQVGGATP DPYILNQTYT MLQGGHLGRP VQQVTQSNAV NLVTNSTLKP LTSTTYEVGG EAQFLNNRLG IDLTYYKKQT TDDIVSTAIS TASGYNNALL NVGKLSNKGV ELLLTGTPIK RKDFSWNVSY NMAYNVSKVE QLAAGLNTLQ MATSVGSWAF VHNTVGQPYG IIMGYTTVQN EKGQTVYNST SGYEQKSELK ALGRGVPPLT MGLSNTFNYK RLSLDILVDG KFGNKVFSGT DVYATRFGLH KKTLVGRENG IELNGVDEKG NDYHNTIPVA NLRLYYDNTK NYTDHFLYDG SFVKLRQVVF SYQIPVAKLK IVQSASLSFV ARNLLILYKK TDNFDPESSY TNGNAQGFEA FGMPRTRSFG ANLMVKF
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