| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6450 |
|---|
| Symbol | |
|---|
| ID | 8362634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8106004 |
|---|
| End bp | 8106684 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644968578 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003126055 |
|---|
| Protein GI | 256425402 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.91659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTTA AAGAACAGCA TATCCTAATT TCGGTTAACA CGTTTTTGAA AACCAAAACA
GCACTACCAA GAGGGGACAG ATTTGTGTTA ACGCATTTTA TTAATAACGA CCAACGGCTG
GCAGCACGCC TGCGCAATAG TGATCATACC GCTTTTGAGG AATTATACGC TACCTATCAT
CAGTTACTGT ATGGTACTGC CTATAAATAC CTGAAAAGCG ATACGGCTGC TGAAGATGCT
GTGCATGAAG CTTTTGTAAA AGTCTGGGTA CACCGGGAAG AACTTGATCC GGTACAGGGC
GTTCGTAATT TTCTCTTTAA ATGCCTGAAA TTTCATGTAC TGAACCTTAT CCGGGATCAT
AAACGTAGCC TTTCCAAACA ATACGAACTA TTATACAATG CTGCTGCTGA TCATCGTGAC
ACGGAATCCA CCGTTATATT GAATGATTAC AGAAAGGTGG TAGAACGCGC CGTTGAAAGT
TTGTCTGCCC AGAAGAAAAA GATCTTCCGC CTCCGTTCCT ATGAAGGACT GAGTAATGAA
GAAGTAGCGG AAAAACTCGG TTTGTCCATC AATACCGTCA AATTTCAATA TGCCCAGGCC
AGCAAAGCCC TGCGCCACGT CCTCAAGATC ATGATGAGTA CCCTCTTCGG CCTGGTTATT
CTCCTTGTTA TCTTTTTTTA A
|
|---|
| Protein sequence | MPFKEQHILI SVNTFLKTKT ALPRGDRFVL THFINNDQRL AARLRNSDHT AFEELYATYH
QLLYGTAYKY LKSDTAAEDA VHEAFVKVWV HREELDPVQG VRNFLFKCLK FHVLNLIRDH
KRSLSKQYEL LYNAAADHRD TESTVILNDY RKVVERAVES LSAQKKKIFR LRSYEGLSNE
EVAEKLGLSI NTVKFQYAQA SKALRHVLKI MMSTLFGLVI LLVIFF
|
|---|
| |