Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6398 |
Symbol | |
ID | 8362582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8042474 |
End bp | 8043712 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644968526 |
Product | anti-FecI sigma factor, FecR |
Protein accession | YP_003126003 |
Protein GI | 256425350 |
COG category | [P] Inorganic ion transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000934033 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGAGA TAAACTATTA TGATACAGAA CTGCTGCAAA GCATTGCCGA TGGCAATGAA ACTTCGTTTG CCCGTTTCTT CAGGGCGGTG GCGCCAATAG TGGAAGCTGA TATAGCCATT GTACTTAGAG GGGATGGCCA TTGCATACTG GCAGTATTAC AGGAAACTTT TATCATTATC TGGTTACACA GAGACAAGCT GCCTCATGTA AAAGACATGG ATGCATATCT GCGCTCTGTA TCATTGCATG AGTGTTATAG CTACCTGCAG GATACGGCAG CAGATGAACT ATTGCCAGTA CCGCAATATG AGGAAGAGCT GCCTCCGGAA GTACAGCATT ATAAAGCTTA TCAGACACTG ATACATGACA CCATCATGTC CTTACCTGAA CAGCGGAGGC TGATCTATGA GATGCATCGC CTGAAAGCGA TGCCGCCTGC CCGGATAGCA ACAGCTATGA ATCTGTCGGT AGATACAGTT ACAGGTGCGA TTAACGCCGT ACATCAGTCA GTCAGGCAAT GTCTGAAGGA CGTTGCGCAT AGCAGTGTAT CGTCCCGTCA TAATAACTGG GTAGTGGAAA AGACAAGGTT GCTGGAGGGA AATCCTCCTG CCGTCAGGTC TTATAATGAA CATTGGACGC CGATGATATC TAAGGCGACG GCGATAGACC GGCCCATACC GGCAGACAGT ACGCCTGCCA TCCGGAAGAT CTATTCCGAA AGGCTGAATT ATCTTTATGC AGCAGCTGCA TTGGTATTCC TGATCGTTGG TCCGGGTATC TATCTGATCT TTATGCGGTC AGAAAAGTCA GCTTCCTTTC GTACGTTGTC TGCTGCGTCC GATCATAAGT CGAAAGATAC TTTACCTGAT GGCACACAGG TCTGGCTGAA CAAGGGAAGT GCGGTAAAGT ACCCTGCATC CTATACAGTC ACTGACAGGG ATGTAGAGGT AAATGGTGAA GCCAGTTTCC AGGTAAACGG GGATAATGAC CGTCCTTTCC ATATCCGCGC ACATCAGCTC TCTGCTGATG TCACTGGTAC ATCGTTTAAT ATCCAGACCT ATCCGACACC TGCCAGGTTA ATCATCACAG CTATGGAGGC CGCTGTTCAC TTACAAGCAG GTAATAAAAG ATTGTCCATT CCCGCCGGTC AGCAGGTAGA GTTGTCCCAC GAGGGGAAAG TATCTGTTAG TAAAGCCGAT ACGGCTGCTA TTGGCGCCTG GAAACAGCAG GTAGAATAG
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Protein sequence | MQEINYYDTE LLQSIADGNE TSFARFFRAV APIVEADIAI VLRGDGHCIL AVLQETFIII WLHRDKLPHV KDMDAYLRSV SLHECYSYLQ DTAADELLPV PQYEEELPPE VQHYKAYQTL IHDTIMSLPE QRRLIYEMHR LKAMPPARIA TAMNLSVDTV TGAINAVHQS VRQCLKDVAH SSVSSRHNNW VVEKTRLLEG NPPAVRSYNE HWTPMISKAT AIDRPIPADS TPAIRKIYSE RLNYLYAAAA LVFLIVGPGI YLIFMRSEKS ASFRTLSAAS DHKSKDTLPD GTQVWLNKGS AVKYPASYTV TDRDVEVNGE ASFQVNGDND RPFHIRAHQL SADVTGTSFN IQTYPTPARL IITAMEAAVH LQAGNKRLSI PAGQQVELSH EGKVSVSKAD TAAIGAWKQQ VE
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