Gene Cpin_6398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6398 
Symbol 
ID8362582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8042474 
End bp8043712 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content48% 
IMG OID644968526 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003126003 
Protein GI256425350 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000934033 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAGA TAAACTATTA TGATACAGAA CTGCTGCAAA GCATTGCCGA TGGCAATGAA 
ACTTCGTTTG CCCGTTTCTT CAGGGCGGTG GCGCCAATAG TGGAAGCTGA TATAGCCATT
GTACTTAGAG GGGATGGCCA TTGCATACTG GCAGTATTAC AGGAAACTTT TATCATTATC
TGGTTACACA GAGACAAGCT GCCTCATGTA AAAGACATGG ATGCATATCT GCGCTCTGTA
TCATTGCATG AGTGTTATAG CTACCTGCAG GATACGGCAG CAGATGAACT ATTGCCAGTA
CCGCAATATG AGGAAGAGCT GCCTCCGGAA GTACAGCATT ATAAAGCTTA TCAGACACTG
ATACATGACA CCATCATGTC CTTACCTGAA CAGCGGAGGC TGATCTATGA GATGCATCGC
CTGAAAGCGA TGCCGCCTGC CCGGATAGCA ACAGCTATGA ATCTGTCGGT AGATACAGTT
ACAGGTGCGA TTAACGCCGT ACATCAGTCA GTCAGGCAAT GTCTGAAGGA CGTTGCGCAT
AGCAGTGTAT CGTCCCGTCA TAATAACTGG GTAGTGGAAA AGACAAGGTT GCTGGAGGGA
AATCCTCCTG CCGTCAGGTC TTATAATGAA CATTGGACGC CGATGATATC TAAGGCGACG
GCGATAGACC GGCCCATACC GGCAGACAGT ACGCCTGCCA TCCGGAAGAT CTATTCCGAA
AGGCTGAATT ATCTTTATGC AGCAGCTGCA TTGGTATTCC TGATCGTTGG TCCGGGTATC
TATCTGATCT TTATGCGGTC AGAAAAGTCA GCTTCCTTTC GTACGTTGTC TGCTGCGTCC
GATCATAAGT CGAAAGATAC TTTACCTGAT GGCACACAGG TCTGGCTGAA CAAGGGAAGT
GCGGTAAAGT ACCCTGCATC CTATACAGTC ACTGACAGGG ATGTAGAGGT AAATGGTGAA
GCCAGTTTCC AGGTAAACGG GGATAATGAC CGTCCTTTCC ATATCCGCGC ACATCAGCTC
TCTGCTGATG TCACTGGTAC ATCGTTTAAT ATCCAGACCT ATCCGACACC TGCCAGGTTA
ATCATCACAG CTATGGAGGC CGCTGTTCAC TTACAAGCAG GTAATAAAAG ATTGTCCATT
CCCGCCGGTC AGCAGGTAGA GTTGTCCCAC GAGGGGAAAG TATCTGTTAG TAAAGCCGAT
ACGGCTGCTA TTGGCGCCTG GAAACAGCAG GTAGAATAG
 
Protein sequence
MQEINYYDTE LLQSIADGNE TSFARFFRAV APIVEADIAI VLRGDGHCIL AVLQETFIII 
WLHRDKLPHV KDMDAYLRSV SLHECYSYLQ DTAADELLPV PQYEEELPPE VQHYKAYQTL
IHDTIMSLPE QRRLIYEMHR LKAMPPARIA TAMNLSVDTV TGAINAVHQS VRQCLKDVAH
SSVSSRHNNW VVEKTRLLEG NPPAVRSYNE HWTPMISKAT AIDRPIPADS TPAIRKIYSE
RLNYLYAAAA LVFLIVGPGI YLIFMRSEKS ASFRTLSAAS DHKSKDTLPD GTQVWLNKGS
AVKYPASYTV TDRDVEVNGE ASFQVNGDND RPFHIRAHQL SADVTGTSFN IQTYPTPARL
IITAMEAAVH LQAGNKRLSI PAGQQVELSH EGKVSVSKAD TAAIGAWKQQ VE