| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6302 |
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| Symbol | |
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| ID | 8362484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7941005 |
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| End bp | 7943287 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644968429 |
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| Product | RNA binding S1 domain protein |
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| Protein accession | YP_003125908 |
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| Protein GI | 256425255 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.820559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.459443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGCA AACACATTGC GCTAATTTCA GCGGAGCTGA ACATCTCAGC GCGACAAGCG
GAGAACACCA TGAATTTGCT GGCGGAAGGG TCGACCGTTC CGTTCATCAG CCGCTACCGT
AAAGAAGTAA CCGGTAGTCT GGATGAGGTA CAGATCGGAA AGATCGAGGA CCTGCAAAAA
CGCTACAAGG AAGTGGATGA ACGCCGCGCT TTCATTATCA AAACCATTAC AGATCAGGAG
AAAATGACAC CTGAGCTGCT TGGCAAAATT GAAGGCACCT GGGCACTCAC CGAACTGGAA
GATATTTATC TGCCTTATAA ACCGAAACGT AAGACCAGAG GTACACAGGC AATTGAGAAA
GGTCTGGAAC CACTGGCTAA ACTGCTGTTC GAACAGCAGG AAGCTGCGCC GCTGACCGCT
GCGGAAGGAT TCCTGAACGA ACAGGTAGCT TCTACCGACG AGGCACTGAA AGGCGCCCGT
GATATCATGG CAGAGTGGAT CAATGAAAAT GCCGAGGTAC GTGACAAACT GCGTAAGCTC
TTCACCCATA CTTCCGTGCT GACATCCAAA GTAATAGAAG GAAAAGAAGA AGAAGGCGCC
AAATACAAAG ACTATTTCGA TTTCAGCGAA GAGATCCACG CGATCCCTTC TCACAGAGCC
CTGGCGATCC TCCGTGGAGA ATCTGAAGGC TTCCTGTATG CAACGATCAA TCCGGCAGAA
GAAGATGCAT CTGAGATCAT CAACAAACAA TTTGTAACCG GCAATAACGA AAGCAGCAAA
CAGGTAGAAA AAGCAGCCGC TGATGCTTAC AAACGCCTGT TGCGCCCATC CCTGGAAAAC
GAATTCCGTG CGCTGACCAA AGAGAAATCT GATGCAGAGG CCATCGAGGT ATTCGCAGAA
AACCTCCGTC AGTTACTGCT GGCGGCACCC CTGGGACCTA AGGCAGTAAT TGCGATTGAT
CCGGGTTACA GAACTGGTTG TAAAGTGGTA GCACTGGATA ACCAGGGTAA CATGCTGGAC
AATGACGTTA TTTATCCACT GGAAAAGAAC TATAAAAGAG ATGATGCTGA AGCCCTGCTG
AAAAAATGGG TTGACAAATA TGACACTGCC GCTATTGCCG TGGGTAATGG TACTGCAGGT
CGTGAAACGG AGGAGTTCGT AAAGAAACTT GACTTTGGTA AAAAAGTGAA CGTATTCATG
GTAAACGAGA GCGGTGCTTC CGTTTATTCT GCTTCTGAAG TGGCAAGGGA AGAATTTCCT
GACTTTGATG TAACCGTTCG TGGTGCCGTA TCTATCGGCC GCAGACTGAT CGATCCGCTG
GCTGAACTGG TGAAAATCGA TCCGAAAGCG ATCGGTGTAG GTCAGTACCA GCACGATGTG
AACCAATCCA GCCTGAAACA GAGCCTGGAC AGAGTGGTTA TAAGCTGCGT GAATAATGTA
GGCGTAAACC TGAATACAGC GTCAAAACAC CTGCTGGCGT ATGTATCCGG TCTGGGACCT
TCCCTGGCGG AAAACATCGT GAAATACCGC AAAGAAAACG GTGCATTCAA AAACCGTACG
CAGCTGAAGA AAGTAACCCG CCTGGGTGAT AAAGCATTCG AACAATGTGC GGGCTTCTTA
CGTATCGAAA ATGGTGATAA CCCGCTGGAT AACTCCGCAG TACACCCTGA GCGTTATTCC
CTGATCGAAA ACATGGCTGC CAAACAGTCC TGTACTGTTC AGGACCTGAT GGCGAAAGAG
GAACTGCGTA AGAAAATTAA TGCGAAAGAA TATGTAAGCG AAGAAGTTGG TCTGCTGACC
CTGGAAGATA TCCTGAAAGA GCTGGACAAA CCAAGCCGTG ACCCTCGTGA CGAGATCGCT
ATCTTTGAAT ATGCCGAAGG TATTCACAAA ATGGAAGACC TGAAAGTAGG TATGACACTG
CCAGGCGTAG TGACCAACAT TACCAACTTC GGTGCATTTG TGGATATCGG GGTAAAACAG
GACGGTCTGG TACACATATC TCACCTGAGC AACCGCTTTA TCAGCAACCC TAACGAAGCG
GTAAAACTGA ACCAGAAAGT AACAGTTACT GTACTGGAGG TGGATCCTTC CCGTAAGCGT
ATTTCTCTGT CTATGAAAGA CAATGAAGCG CCACAGGCAG GCAGCGGACA GCGCAGAGAA
AGAAGAGAAG GTGGTAACAA CAACAACAGC AACAGTAGTA ACAGGAATGC CAAACAGGGT
GCACCAGCGC CGCTGAATGA TTTCCAGGCG AAACTGGCTG AGCTGAAGAA GAAGTTCAAC
TAA
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| Protein sequence | MNSKHIALIS AELNISARQA ENTMNLLAEG STVPFISRYR KEVTGSLDEV QIGKIEDLQK
RYKEVDERRA FIIKTITDQE KMTPELLGKI EGTWALTELE DIYLPYKPKR KTRGTQAIEK
GLEPLAKLLF EQQEAAPLTA AEGFLNEQVA STDEALKGAR DIMAEWINEN AEVRDKLRKL
FTHTSVLTSK VIEGKEEEGA KYKDYFDFSE EIHAIPSHRA LAILRGESEG FLYATINPAE
EDASEIINKQ FVTGNNESSK QVEKAAADAY KRLLRPSLEN EFRALTKEKS DAEAIEVFAE
NLRQLLLAAP LGPKAVIAID PGYRTGCKVV ALDNQGNMLD NDVIYPLEKN YKRDDAEALL
KKWVDKYDTA AIAVGNGTAG RETEEFVKKL DFGKKVNVFM VNESGASVYS ASEVAREEFP
DFDVTVRGAV SIGRRLIDPL AELVKIDPKA IGVGQYQHDV NQSSLKQSLD RVVISCVNNV
GVNLNTASKH LLAYVSGLGP SLAENIVKYR KENGAFKNRT QLKKVTRLGD KAFEQCAGFL
RIENGDNPLD NSAVHPERYS LIENMAAKQS CTVQDLMAKE ELRKKINAKE YVSEEVGLLT
LEDILKELDK PSRDPRDEIA IFEYAEGIHK MEDLKVGMTL PGVVTNITNF GAFVDIGVKQ
DGLVHISHLS NRFISNPNEA VKLNQKVTVT VLEVDPSRKR ISLSMKDNEA PQAGSGQRRE
RREGGNNNNS NSSNRNAKQG APAPLNDFQA KLAELKKKFN
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