| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6289 |
|---|
| Symbol | |
|---|
| ID | 8362471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7922857 |
|---|
| End bp | 7923699 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644968416 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003125895 |
|---|
| Protein GI | 256425242 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0798943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAG ATTATCAATA CACACTGTTT CCATACGCAT ATAATATTCT TGGTTCTGCG
GAGGATGCAA AAGACACCAT ACAGGATGTA TTATCCAATT ATGTGACTGC AAACAGAGAA
GGCATCGAGA ATGAAAAAGC ATACCTGGTA CGTAGTGTTA TCAACCAGTC GATCAATGCA
AAGAAAAAGC GTAAAACTGT AAACTACGAA GATGTATGGT TACCGGAACC GGTAGCTACA
GAAGAGGCAG ACAAAGCGCT GCATCTGCGG GATATCGGTT CCTACACAAT GCTTATACTG
ATGGAAGAAC TCAACCCCAA AGAAAGGGCT GTCTTTATAC TGAAAGAAGG CTTTGGCTAT
TCTCATGACG AGATAGCCGA TGTACTTTCC GGTTCGGTGG AACAATCCCG TAAACTGCTC
AGTCGTGCAA AGGCGAAGCT GGACGCGCGC AGACAGGGAG CGCCGATGAA CAACAAGACT
GTCTCAGCCG CCCTGCTCGA TCAGTACCTG CACGCTATCC GTAAAGGAGA TACGCAAAGA
CTGGAAAATA TGCTGTCGCA GGATATCGTA TTCTATGCTG ACGGTGGCAG CAAACTGAAT
GTAGCCCGGA AGATCTGTAC CGGTTTGCAG GATGTATCCG AACTGCTTGT ATATACATAC
AATAAATACC AGCGTGAATT TGAATTTGAA TTTACCTTGA TCAATCACCA GCCGGCCTTG
CTGTTTTACC TGGGTGAAAA ACTGTATGGA TGTCAGGTAT TCACTATTTC TCCGGAGGAT
AATAAAATCC TGCAGATATC CACTGTATTA GATCCGGATA AGTTAAAAAA CATAGGGAAA
TAA
|
|---|
| Protein sequence | MLKDYQYTLF PYAYNILGSA EDAKDTIQDV LSNYVTANRE GIENEKAYLV RSVINQSINA
KKKRKTVNYE DVWLPEPVAT EEADKALHLR DIGSYTMLIL MEELNPKERA VFILKEGFGY
SHDEIADVLS GSVEQSRKLL SRAKAKLDAR RQGAPMNNKT VSAALLDQYL HAIRKGDTQR
LENMLSQDIV FYADGGSKLN VARKICTGLQ DVSELLVYTY NKYQREFEFE FTLINHQPAL
LFYLGEKLYG CQVFTISPED NKILQISTVL DPDKLKNIGK
|
|---|
| |