| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6149 |
|---|
| Symbol | |
|---|
| ID | 8362331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7753347 |
|---|
| End bp | 7754369 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644968279 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003125758 |
|---|
| Protein GI | 256425105 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCT CCGTTCATTA CTATGCCAGC TTTACTGCCA TCCAACTGGC CGCAGATCCT
TACTTCCTGG AATGGGTAAG GTTCCCTGAT GCTGCTGGTA ACCAGTTCTG GGAGCAATTC
CTGTTGACTT ATCCGCATAA AACTGCCGAT ATCGCCCGTG CCGGTGAGAT CGCACGTAGT
ATGTATGCAT TGGCTGACAA GCCTTCCGCG CAACAGCAGG AAGATAACTG GAAGCGTATC
CAGGCAGCTT TGCCAGATAC TCAACTGGCC ATGCCACGTC GTTCCATCCT GCGTACGATA
CGACCGGTAT GGACAGCTGC AGCCGCTGTA GCCGTAGCAG CTATCGCCGT ATGGCTGATA
TTTCGCCCGG TAACCAGAGA AGTGAGTATC GCTTCCGGTT ACGGAGAGGT AAAAGGCGTT
TTGCTGCCAG ATGGCACACA GGTAAAACTG AATGGTAATT CAAGCTTACG ATATAGTGAA
CAATGGAAAG CCGGATCACC CAGGGAAGTC TGGGTGGAAG GGGAAGCCTT CTTTGACGTA
AAACCGGTAG CCAGTAACAA TGCCTCTCAA CGCTTTGAAG TGCACAGCGG CGATATCGAT
GTACAGGTCC TTGGTACATC ATTCAACGTG CGCAGCCGCA GAGGGATCAG TGATGTAATG
CTGACTACAG GAAAGGTCAT GGTGGCGGCC GACGGGAAAG AGCAACTCCT GTCCAGCCCC
GGAGAACTGG CCACATTCAA TCAGAAAAGA CTGGAGAAAA AAGTAGTACC GGTCGCTAAC
TACACCAGCT GGCAGGAACA GAAACTGCAA CTGGAACAAA CCAGCGTAGC TGATCTCTTC
GCAAGGCTGG AAGATGACTG GGGTTATAAT ATCCGGCTGA ACGACACTTC CCTGCTTCAG
AAGAAGATCA GCGGGGAAAT AGACATGAAG GATAAACAGG TATTAATTAA TGCGCTTGCT
TTGATACTAC ATGCAGATGT ATCACAACAG GGAGAATCAA CCATCATAAT CACACCCAAC
TAA
|
|---|
| Protein sequence | MKRSVHYYAS FTAIQLAADP YFLEWVRFPD AAGNQFWEQF LLTYPHKTAD IARAGEIARS
MYALADKPSA QQQEDNWKRI QAALPDTQLA MPRRSILRTI RPVWTAAAAV AVAAIAVWLI
FRPVTREVSI ASGYGEVKGV LLPDGTQVKL NGNSSLRYSE QWKAGSPREV WVEGEAFFDV
KPVASNNASQ RFEVHSGDID VQVLGTSFNV RSRRGISDVM LTTGKVMVAA DGKEQLLSSP
GELATFNQKR LEKKVVPVAN YTSWQEQKLQ LEQTSVADLF ARLEDDWGYN IRLNDTSLLQ
KKISGEIDMK DKQVLINALA LILHADVSQQ GESTIIITPN
|
|---|
| |