| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6104 |
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| Symbol | |
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| ID | 8362286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7701952 |
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| End bp | 7703358 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644968235 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003125714 |
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| Protein GI | 256425061 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT ACTTATATAT CATAGGTTTT GCAGGTATTG CTGTTATAGC ATCCTGTAAA
GTAGGGAAGG AGTTCGCCAG ACCATCCGTG GATATGCCTG CGCAGTTCCG CGGAGAGGCA
TCCGCAGATA CCAATAACAT TGCCGTATTG CCTGTATCGT CTTTCATCAA AGACGCCGCG
TTGCTGAGAT TGATCGATAG TGCTGTGGCA AAGAATTTCG ACGTACAGGT AGCACTGAAG
AATATTGAAT CGGCCGGTGC GTCTCTTAAA TCTGCCCGAT CAGGCAGATT ACCGGACCTG
AACCTTAGTG TACAGGGGAC CCGTAACTGG CCCTCTAAAA ACAGCCTGAA TGGCTCTCTG
TCAGAACAGT TCATCGGTAC CCGCTATATG GATGACTATA ATGCTGGTCT GAACCTGAGC
TGGGAGGTAG TAGCCTGGGG AAAGATCAGC CGTTTGAAAG AAGCTGCGCT GGCTACCTAC
CTGCAATCCA CGGAAGCCTC CAAAGCGGTA AGAACAAGAG TGATCAGTGA TGTGGCGCAG
GCATATTATA ATCTGCTGAT GCTGGATACA CAGAAGGAGG TGGCTTACAG AAACATGCAA
CTGACCGATA GTACCCTGCG TATTGTACGT CTGCAATACA GTTCGGGTAT GGCGACCAAT
CTCGCCGTTG AGCAGATCGA AGCCCAGCTC CGTGTATCCC TGGCACTTAT TCCGCAGATA
GAACAGCAGA TTGCTATACA GGAAAATGCA TTGAAAACGC TGACAGGCGA AATGCCCGGC
GGTATAGTCA GGAACCGACT GCAGGACCTT ACAGCTGATA CAACGCTTGC CGCAGGTGTT
CCTGCCAGTC TGCTGTCCCG CAGACCCGAT GTACGTGCAG CCGAAATGGC GGTAAAAGTC
GCCAATGCAC GTGCAGGCGT AGCAGAAGCA GCGATGTATC CGGCCCTCAA TATTACTGCC
GGGGTAGGAG TGAATTCATT TAAGATCGAT AACTGGTTAA ATATTCCGGG CAGCCTTTTT
GAAACAGTAG GCGGCAGCAT CACACAACCT GTATTCAGAC GCAGGCAATT AAGAACAGAA
TGGGAAACAG CTAAAATCGA TTGGGAAAAG AGCGTGATTG AGTTTAGGCG CTCTGTAACA
ACGGCTGTAC AGGAAGTAAG TGATGCGCTG GCAAAAATGG ACAAGCTGAA AGAGCAGTAC
ATTTTTACAC AGCAACGTGT GGATCGATTG GAAATTGCTA CGCACGACGC CAGCCTGCTG
TTTCAAAACG GTATGGCCAA TTATCTTGAA GTGATCACCG CCCAGAGTAA TGCCCTGCAA
AGTGAACTGG ACCTGGCAGC TGTCAAACGC GATCAGCTCA ATGCCACCGT CGACCTCTAC
CGCGCACTGG GTGGTGGCTG GAAATAA
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| Protein sequence | MNKYLYIIGF AGIAVIASCK VGKEFARPSV DMPAQFRGEA SADTNNIAVL PVSSFIKDAA
LLRLIDSAVA KNFDVQVALK NIESAGASLK SARSGRLPDL NLSVQGTRNW PSKNSLNGSL
SEQFIGTRYM DDYNAGLNLS WEVVAWGKIS RLKEAALATY LQSTEASKAV RTRVISDVAQ
AYYNLLMLDT QKEVAYRNMQ LTDSTLRIVR LQYSSGMATN LAVEQIEAQL RVSLALIPQI
EQQIAIQENA LKTLTGEMPG GIVRNRLQDL TADTTLAAGV PASLLSRRPD VRAAEMAVKV
ANARAGVAEA AMYPALNITA GVGVNSFKID NWLNIPGSLF ETVGGSITQP VFRRRQLRTE
WETAKIDWEK SVIEFRRSVT TAVQEVSDAL AKMDKLKEQY IFTQQRVDRL EIATHDASLL
FQNGMANYLE VITAQSNALQ SELDLAAVKR DQLNATVDLY RALGGGWK
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