Gene Cpin_5962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5962 
Symbol 
ID8362144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7570764 
End bp7571816 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content41% 
IMG OID644968102 
ProductIntegrase catalytic region 
Protein accessionYP_003125581 
Protein GI256424928 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.454691 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTA ATGACAAGTT AATCAAAACG AAGTTAGGTC TGCTGAAATT AGCAGAAAAC 
TTAGGTAACG TATCCCGTGC TTCTAAAGTG ATGGGTTACA GCCGAGACAG CTTCTATCGC
ATCAAAGAGA TGTATGATAC AGGCGGAGAG TTGGCCTTGC AAGAGATAAG CCGCTCTAAA
CCCATTCTTA AAAACCGAGT TGAACCATTT GTTGAAGAAG CCGTAGTAAA ATTGGCTTGT
GATTATCCTG CCTTTGGTCA GCAACGGGTG AGTAATGAAC TTCGTAAACA AGGCATATTT
ATCTCTGCAG GCGGTGTGCG TAGTGTTTGG CAAAGGCACG ACCTGGAGGT ATTTGATAAG
AGATTAAAGT CCCTTGAAGC CAAGATTGCT CAGGATGGTA TTATTCTCAC GGAAGCTCAA
ATGATGGCTC TTGAACGGAA AAAGGAGAAA AGAGAGGCTT ACGGAGAAAT AGAAACAGAA
CATCCTGGTT ACCTTGGAGC CCAGGATACT TATTACGTTG GAAGTATTAA AGGCGTTGGA
AGAATTTATC AACAGACATT TATCGACACC TATTCCCGCA TCGCTTTTGC AAAAGTTTAC
GACCGAAAAA ATGCAATCGT AGCTGCTGAT ATTCTTAATG ATCGAGTACT TCCATTCTTC
GAAGATCAAG ATGTTCCTAT GCTTCGTATT TTGACAGACC GAGGATCAGA ATATAAAGGT
AAATACGAGC ATCATGAATA TGAGCTATAT CTTACTATAG AGGGCATAGA ACACTCTAAA
ACACAGGTGC GCAGCCCTCA GTCAAACGGG ATCTGTGAGC GGCTTAACAG GACAATAAAA
GAGGAGTTTT ACGTTATTGC ATTCCGTAAG ACGATTTACA CTACGTTAGA GCAACTACAG
GCTGATTTAG ATAACTGGCT TACTTACTAC AACAACGAGC GACCTCACAG CGGAAAATAC
TGTTATGGTA AAACTCCCAT GGAGACTTTT ATTGCAACTA AACACCTGGC AAAAGAAAAA
CAATTAAATC AGTTATCTTT AGCTATCAAT TAA
 
Protein sequence
MKSNDKLIKT KLGLLKLAEN LGNVSRASKV MGYSRDSFYR IKEMYDTGGE LALQEISRSK 
PILKNRVEPF VEEAVVKLAC DYPAFGQQRV SNELRKQGIF ISAGGVRSVW QRHDLEVFDK
RLKSLEAKIA QDGIILTEAQ MMALERKKEK REAYGEIETE HPGYLGAQDT YYVGSIKGVG
RIYQQTFIDT YSRIAFAKVY DRKNAIVAAD ILNDRVLPFF EDQDVPMLRI LTDRGSEYKG
KYEHHEYELY LTIEGIEHSK TQVRSPQSNG ICERLNRTIK EEFYVIAFRK TIYTTLEQLQ
ADLDNWLTYY NNERPHSGKY CYGKTPMETF IATKHLAKEK QLNQLSLAIN