Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5935 |
Symbol | |
ID | 8362116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 7535805 |
End bp | 7539098 |
Gene Length | 3294 bp |
Protein Length | 1097 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968074 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003125554 |
Protein GI | 256424901 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.545401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATTTA GAAGACTACT ATTTACATTC ATTGTTCTGT TTAGCACAAT CACTTCGTTT GCGCAGGTAA CTACCAGTAG CATGATTGGT AGAATCACCG GCCCTTCGAA GGAGGCGTTA CCCGGGGCTA CCGTTGTTGT GATCCATCAG CCTTCAGGTA CCAAGTACGG AACAACTACC GATGCGGAAG GTTACTACCG TATCCCCAAC ATGAACGTTG GTGGTCCTTA CAAAGTAACT TCTACCTTTA TCGGTTACAC TGAATACAAT CAGGGCGATA TCTTCCTCGC ACTCGGTCAG CCATTCAGAC TGAACATCAG CCTTGGCGAA AAAGCCCAGG ATATCAAAGA AGTACAGGTA ATTGGTCAAA GAAGCACTGT CTTCAATTCT AACCGTAAGG GAGCACAGAC TACCCTGAAC CGCACACAGG TTGAAGCCCT GCCTTCAGTA GGTAGAAACC TCACTGACTT TGTACGTTTA ACGCCTCAGG CGAAACTGAC CAAAGACGGT AGCGGTAACC AGACTATATC TATCGCAGGT ACCAGCAACA AGTACAACGC TACTTTCGTT GATGGTGCGG TACAGAACGA TGTATTCGGT CTGGCAGAAA ATGGTACCAA TGGTGGTCAG ATCGGTATTT CTCCGTTCAG CATTGACATC ATTGACCAGT TCAATATTAA CGTATCTCCG TTCGACGTTA AACAGGGTGG TTTCGCAGGT GGCGCCATCA ACGCTGTAAC CAAAAGCGGT ACTAATGAAA TAGAAGGTTC TGCATATTAC TTCGTACGTA ACGAAAGCCT CGCTGGTAAG ACTCCAACAA AAGACGAAAG CAAACGTACC AAACTGGCAG ATTTCTCTTC CAAAACATAC GGCGTACGTT TAGGTGGTCC GATCATCAAG AATAAACTGT TCTACTTCGT CAACGCAGAA TGGCAGAAAG AAAACCGTCC GCAGCCATTC GCTTATGAAA CATATGCGAA TGGTCGTGCT ACTCCGGCTT CAAGGGGTAA GCTGGATACA CTACAAACTA AATTGCGCTC AGCAGGTTAC GATCCGGGCG GATATGAGAC AACTGAAAAT ACACTGGATG GCCGCAAGTT CTTTGCAAGA ATTGACTGGA ACATCAACGA AAATAACAAG TTCACTATCC GTCACCAGTA TACACATGGT GAGAGCGTAA GTCCTGGTAA ATCCAGCGCT TCTACTATCA CCTTCTCTAA TAAAGGTATC TCCTTCCCTT CTACCACCAA CGCTACCACT GCTGAGCTGA AAAGCCAGTT TGGTAACAGG GCGTCTAACT CCCTGCTGTT AGGTGCTAAC TTCGTAAGAG ACGACCGCGG TATCACCGGC GCTCCATATA CTTCCGTATT CATTTCAAGA GAATCTATCA GCTTCGGTAC AGAAGAGTTT TCTGCAGCTA ACCTGCTGAA ACAGGACGTA CTGACCCTGA CTGATAACCT GGAACTGTAC AGAGGTAAAC ACACCATCTC CCTGGGGACA AGTAACGAGT TCTATAACAT GACCAACGTA TTTATCGGTC AGAACTTTGG TTCTTATACT TTCGCTACCC TGGATGATTT CCTCAATGAC AAATCACCAA CCCAGTACAA CCGTTCCTTC TCAGCTGTAG ATAAAACTAC CGGTGATAAC ACCAACGGTG CTGCTAAATT CAAAGCACTG CAACTGGGTC TGTATGCACA GGACGACTAC CAGGTAAACG ATCGTTTACG TTTATCACTG GGTGTTCGTG CTGACCTGCC GATGCTGCTG ACTGATCCTG CTGTAAACAA TGATTTCAAT ACCAATGTAC TGCCTCAGGT AGTTGCTGCC GGTAAATGGG ATATCAAAGG TGCACAGACA GGTGTTAAGC CAGACGCTAA GCTTCTGCTG TCTCCACGCT TTGCCTTTAA CTGGGACGTG AAAGGTGACC AGACTACCCA GATCCGTGGT GGCGCCGGTA TCTTCACCAG CCGCATCCCT TATGTTTGGT TAGGTGGTAT CTATAACAAC AATGGTGTTA CCCTGGGTGG TATGAGACTC GCTTACGATT CTACCAAACC AACCGGCGGT ACCAACAACC CGATTCCTTT TGTATCTGAT CCTTATGCGC AGCCTAGCAT CACTGCTGCG CCATCAGGTA AAATTGATCT GTTTGCAAAA GATTTCAAAT TCCCTCAGGT ATTCAGAACC AGCATCGCTG TTGATCAGAA ATTGCCTTGG GGTATGGTGG GTAGCTTAGA AGCGATCTAC ACCAAAAACA TCAACAACGT TGTTTATTAC AACCTGTCTT ACATCCCTGC TGGTACGAAT GTAACCGGTA GCGGTAGCGA CAACCGTCCG ATGTGGAAAA ACGTAGGTAA ACCAATTCTG GGTAACTACA CTGATATCAT GTATGCTGAT AATACCAGCA AAGGTTATTC TTACAACCTG ACTGCTCAGT TACAAAAAAC CTTCTATGGT GGTTTCAGCG CAATGGCCGC TTACACTTAC GGTCGTTCTA AAAGCATCAA CGACGGTCAG TCTTCTCAAA ACTCTTCTCA GTGGAGAGTA CCAAACGTGA GAGGTCGTAA CGACATCGAT CTGGGTACGT CTATCTTCGA CCTGGGTTCA AGAATCATTG CTTCTGTAAC TTACAAGAAA GAATACCTGA AACACTTCGG TACGACTGTT ACCCTGTACT ACACTGGTCA GTCCGGCGAA AGATTCTCTT ACGGTTACAG AGATATTCCT AACACCAACA TCGTTGGCGA CTACAACGGT TCCAGCAGTG ATAAAGGTCT GAACCTGATC TACATCCCGA GAAGTGCATC AGAGATCAAC CTCGTATCCT ACCAGGCTAA CGGTGCAACC GTTACTCCGG AACAACAGTG GGCTGCACTG GATGCGTTCA TCAATGGTGA TAAATACCTG AGCAAACACA GAGGTGAATA TGCACCGAAG AATGGTCTGA GAACTCCGTT CACACACATC TTTGACCTGC ACATCGCACA GGATATCTAC ATCACCCAGA AAAATGGTAA ACGTCATACA TTACAGATCT CCTTCGACGT ATTCAACCTG GGTAATATGA TCAATAACGA CTGGGGTCGC GTATACTCTA CCCGTACAGG TATGAGCTAC AACAACTACG GTCTGATCGA CTTCGTTGGT TTTGCAGCTA ACGGAACTAC TCCGACGTAT AATTTTAAAG CGCCTACCAA ATACGACAAC AAGACTGTTG CTCAGATCGA TGATTTCGGT TTACAGTCTG CTCGTTGGCA GGGTCAGCTG GGCTTCCGCT ATATCTTCAG ATAA
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Protein sequence | MGFRRLLFTF IVLFSTITSF AQVTTSSMIG RITGPSKEAL PGATVVVIHQ PSGTKYGTTT DAEGYYRIPN MNVGGPYKVT STFIGYTEYN QGDIFLALGQ PFRLNISLGE KAQDIKEVQV IGQRSTVFNS NRKGAQTTLN RTQVEALPSV GRNLTDFVRL TPQAKLTKDG SGNQTISIAG TSNKYNATFV DGAVQNDVFG LAENGTNGGQ IGISPFSIDI IDQFNINVSP FDVKQGGFAG GAINAVTKSG TNEIEGSAYY FVRNESLAGK TPTKDESKRT KLADFSSKTY GVRLGGPIIK NKLFYFVNAE WQKENRPQPF AYETYANGRA TPASRGKLDT LQTKLRSAGY DPGGYETTEN TLDGRKFFAR IDWNINENNK FTIRHQYTHG ESVSPGKSSA STITFSNKGI SFPSTTNATT AELKSQFGNR ASNSLLLGAN FVRDDRGITG APYTSVFISR ESISFGTEEF SAANLLKQDV LTLTDNLELY RGKHTISLGT SNEFYNMTNV FIGQNFGSYT FATLDDFLND KSPTQYNRSF SAVDKTTGDN TNGAAKFKAL QLGLYAQDDY QVNDRLRLSL GVRADLPMLL TDPAVNNDFN TNVLPQVVAA GKWDIKGAQT GVKPDAKLLL SPRFAFNWDV KGDQTTQIRG GAGIFTSRIP YVWLGGIYNN NGVTLGGMRL AYDSTKPTGG TNNPIPFVSD PYAQPSITAA PSGKIDLFAK DFKFPQVFRT SIAVDQKLPW GMVGSLEAIY TKNINNVVYY NLSYIPAGTN VTGSGSDNRP MWKNVGKPIL GNYTDIMYAD NTSKGYSYNL TAQLQKTFYG GFSAMAAYTY GRSKSINDGQ SSQNSSQWRV PNVRGRNDID LGTSIFDLGS RIIASVTYKK EYLKHFGTTV TLYYTGQSGE RFSYGYRDIP NTNIVGDYNG SSSDKGLNLI YIPRSASEIN LVSYQANGAT VTPEQQWAAL DAFINGDKYL SKHRGEYAPK NGLRTPFTHI FDLHIAQDIY ITQKNGKRHT LQISFDVFNL GNMINNDWGR VYSTRTGMSY NNYGLIDFVG FAANGTTPTY NFKAPTKYDN KTVAQIDDFG LQSARWQGQL GFRYIFR
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